move entities to separate packages

bprize15 · Nov 1, 2024 · 831c624 · 831c624
1 parent 4160079
commit 831c624
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diff --git a/src/main/java/org/mskcc/oncokb/curation/converters/EntityToMapConverter.java b/src/main/java/org/mskcc/oncokb/curation/converters/EntityToMapConverter.java
@@ -7,13 +7,13 @@
 import java.util.Map;
 import java.util.Set;
 import java.util.stream.Collectors;
-import org.mskcc.oncokb.curation.domain.Alteration;
-import org.mskcc.oncokb.curation.domain.Article;
-import org.mskcc.oncokb.curation.domain.CancerType;
-import org.mskcc.oncokb.curation.domain.CompanionDiagnosticDevice;
-import org.mskcc.oncokb.curation.domain.Drug;
-import org.mskcc.oncokb.curation.domain.FdaSubmission;
-import org.mskcc.oncokb.curation.domain.Gene;
+import org.mskcc.oncokb.curation.domain.Alteration.Alteration;
+import org.mskcc.oncokb.curation.domain.Article.Article;
+import org.mskcc.oncokb.curation.domain.CancerType.CancerType;
+import org.mskcc.oncokb.curation.domain.CompanionDiagnosticDevice.CompanionDiagnosticDevice;
+import org.mskcc.oncokb.curation.domain.Drug.Drug;
+import org.mskcc.oncokb.curation.domain.FdaSubmission.FdaSubmission;
+import org.mskcc.oncokb.curation.domain.Gene.Gene;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 import org.springframework.core.convert.TypeDescriptor;

diff --git a/src/main/java/org/mskcc/oncokb/curation/converters/MapToEntityConverter.java b/src/main/java/org/mskcc/oncokb/curation/converters/MapToEntityConverter.java
@@ -7,13 +7,13 @@
 import java.util.Map;
 import java.util.Set;
 import java.util.stream.Collectors;
-import org.mskcc.oncokb.curation.domain.Alteration;
-import org.mskcc.oncokb.curation.domain.Article;
-import org.mskcc.oncokb.curation.domain.CancerType;
-import org.mskcc.oncokb.curation.domain.CompanionDiagnosticDevice;
-import org.mskcc.oncokb.curation.domain.Drug;
-import org.mskcc.oncokb.curation.domain.FdaSubmission;
-import org.mskcc.oncokb.curation.domain.Gene;
+import org.mskcc.oncokb.curation.domain.Alteration.Alteration;
+import org.mskcc.oncokb.curation.domain.Article.Article;
+import org.mskcc.oncokb.curation.domain.CancerType.CancerType;
+import org.mskcc.oncokb.curation.domain.CompanionDiagnosticDevice.CompanionDiagnosticDevice;
+import org.mskcc.oncokb.curation.domain.Drug.Drug;
+import org.mskcc.oncokb.curation.domain.FdaSubmission.FdaSubmission;
+import org.mskcc.oncokb.curation.domain.Gene.Gene;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 import org.springframework.core.convert.TypeDescriptor;

diff --git a/...ration/domain/AbstractAuditingEntity.java → ...uditingEntity/AbstractAuditingEntity.java b/...ration/domain/AbstractAuditingEntity.java → ...uditingEntity/AbstractAuditingEntity.java
@@ -1,4 +1,4 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.AbstractAuditingEntity;
 
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import jakarta.persistence.Column;

diff --git a/...kcc/oncokb/curation/domain/Alignment.java → .../curation/domain/Alignment/Alignment.java b/...kcc/oncokb/curation/domain/Alignment.java → .../curation/domain/Alignment/Alignment.java
@@ -1,4 +1,4 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.Alignment;
 
 /**
  * Created by Hongxin Zhang on 10/23/20.

diff --git a/...cokb/curation/domain/AlignmentResult.java → ...ion/domain/Alignment/AlignmentResult.java b/...cokb/curation/domain/AlignmentResult.java → ...ion/domain/Alignment/AlignmentResult.java
@@ -1,4 +1,4 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.Alignment;
 
 /**
  * Created by Hongxin Zhang on 10/23/20.

diff --git a/...ation/domain/EnrichedAlignmentResult.java → ...in/Alignment/EnrichedAlignmentResult.java b/...ation/domain/EnrichedAlignmentResult.java → ...in/Alignment/EnrichedAlignmentResult.java
@@ -1,4 +1,4 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.Alignment;
 
 import org.genome_nexus.client.EnsemblTranscript;
 

diff --git a/...c/oncokb/curation/domain/AlleleState.java → ...ation/domain/AlleleState/AlleleState.java b/...c/oncokb/curation/domain/AlleleState.java → ...ation/domain/AlleleState/AlleleState.java
@@ -1,11 +1,12 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.AlleleState;
 
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import jakarta.persistence.*;
 import jakarta.validation.constraints.*;
 import java.io.Serializable;
 import java.util.HashSet;
 import java.util.Set;
+import org.mskcc.oncokb.curation.domain.GenomicIndicator.GenomicIndicator;
 
 @Entity
 @Table(name = "allele_state")

diff --git a/...cc/oncokb/curation/domain/Alteration.java → ...uration/domain/Alteration/Alteration.java b/...cc/oncokb/curation/domain/Alteration.java → ...uration/domain/Alteration/Alteration.java
@@ -1,13 +1,19 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.Alteration;
 
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
+import com.fasterxml.jackson.annotation.JsonProperty;
 import jakarta.persistence.*;
 import jakarta.validation.constraints.*;
 import java.io.Serializable;
 import java.util.HashSet;
 import java.util.Set;
 import org.javers.core.metamodel.annotation.DiffIgnore;
 import org.javers.core.metamodel.annotation.ShallowReference;
+import org.mskcc.oncokb.curation.domain.Association.Association;
+import org.mskcc.oncokb.curation.domain.Consequence.Consequence;
+import org.mskcc.oncokb.curation.domain.Flag.Flag;
+import org.mskcc.oncokb.curation.domain.Gene.Gene;
+import org.mskcc.oncokb.curation.domain.Transcript.Transcript;
 import org.mskcc.oncokb.curation.domain.enumeration.AlterationType;
 import org.mskcc.oncokb.curation.util.AminoAcidConverterUtils;
 

diff --git a/...on/domain/AlterationAnnotationStatus.java → ...ionStatus/AlterationAnnotationStatus.java b/...on/domain/AlterationAnnotationStatus.java → ...ionStatus/AlterationAnnotationStatus.java
@@ -1,5 +1,7 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.AlterationAnnotationStatus;
 
+import org.mskcc.oncokb.curation.domain.Alteration.Alteration;
+import org.mskcc.oncokb.curation.domain.EntityStatus.EntityStatus;
 import org.mskcc.oncokb.curation.domain.dto.AnnotationDTO;
 
 public class AlterationAnnotationStatus extends EntityStatus<Alteration> {

diff --git a/...mskcc/oncokb/curation/domain/Article.java → ...cokb/curation/domain/Article/Article.java b/...mskcc/oncokb/curation/domain/Article.java → ...cokb/curation/domain/Article/Article.java
@@ -1,4 +1,4 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.Article;
 
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import jakarta.persistence.*;
@@ -9,6 +9,10 @@
 import java.util.Set;
 import org.javers.core.metamodel.annotation.DiffIgnore;
 import org.javers.core.metamodel.annotation.ShallowReference;
+import org.mskcc.oncokb.curation.domain.Association.Association;
+import org.mskcc.oncokb.curation.domain.FdaSubmission.FdaSubmission;
+import org.mskcc.oncokb.curation.domain.Flag.Flag;
+import org.mskcc.oncokb.curation.domain.Synonym.Synonym;
 import org.mskcc.oncokb.curation.domain.enumeration.ArticleType;
 
 /**

diff --git a/...c/oncokb/curation/domain/Association.java → ...ation/domain/Association/Association.java b/...c/oncokb/curation/domain/Association.java → ...ation/domain/Association/Association.java
@@ -1,11 +1,22 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.Association;
 
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import jakarta.persistence.*;
 import java.io.Serializable;
 import java.util.HashSet;
 import java.util.Set;
 import org.javers.core.metamodel.annotation.ShallowReference;
+import org.mskcc.oncokb.curation.domain.Alteration.Alteration;
+import org.mskcc.oncokb.curation.domain.Article.Article;
+import org.mskcc.oncokb.curation.domain.CancerType.CancerType;
+import org.mskcc.oncokb.curation.domain.ClinicalTrial.ClinicalTrial;
+import org.mskcc.oncokb.curation.domain.ClinicalTrialArm.ClinicalTrialArm;
+import org.mskcc.oncokb.curation.domain.Drug.Drug;
+import org.mskcc.oncokb.curation.domain.EligibilityCriteria.EligibilityCriteria;
+import org.mskcc.oncokb.curation.domain.Evidence.Evidence;
+import org.mskcc.oncokb.curation.domain.FdaSubmission.FdaSubmission;
+import org.mskcc.oncokb.curation.domain.GenomicIndicator.GenomicIndicator;
+import org.mskcc.oncokb.curation.domain.Rule.Rule;
 
 /**
  * An Association.

diff --git a/...kcc/oncokb/curation/domain/Authority.java → .../curation/domain/Authority/Authority.java b/...kcc/oncokb/curation/domain/Authority.java → .../curation/domain/Authority/Authority.java
@@ -1,4 +1,4 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.Authority;
 
 import jakarta.persistence.Column;
 import jakarta.persistence.Entity;

diff --git a/...cc/oncokb/curation/domain/CancerType.java → ...uration/domain/CancerType/CancerType.java b/...cc/oncokb/curation/domain/CancerType.java → ...uration/domain/CancerType/CancerType.java
@@ -1,4 +1,4 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.CancerType;
 
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import jakarta.persistence.*;
@@ -8,6 +8,8 @@
 import java.util.Set;
 import org.javers.core.metamodel.annotation.DiffIgnore;
 import org.javers.core.metamodel.annotation.ShallowReference;
+import org.mskcc.oncokb.curation.domain.Association.Association;
+import org.mskcc.oncokb.curation.domain.Synonym.Synonym;
 import org.mskcc.oncokb.curation.domain.enumeration.TumorForm;
 
 /**

diff --git a/...uration/domain/CategoricalAlteration.java → ...icalAlteration/CategoricalAlteration.java b/...uration/domain/CategoricalAlteration.java → ...icalAlteration/CategoricalAlteration.java
@@ -1,9 +1,10 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.CategoricalAlteration;
 
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import jakarta.persistence.*;
 import jakarta.validation.constraints.*;
 import java.io.Serializable;
+import org.mskcc.oncokb.curation.domain.Consequence.Consequence;
 import org.mskcc.oncokb.curation.domain.enumeration.AlterationType;
 
 /**

diff --git a/...oncokb/curation/domain/ClinicalTrial.java → ...n/domain/ClinicalTrial/ClinicalTrial.java b/...oncokb/curation/domain/ClinicalTrial.java → ...n/domain/ClinicalTrial/ClinicalTrial.java
@@ -1,4 +1,4 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.ClinicalTrial;
 
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import jakarta.persistence.*;
@@ -7,6 +7,9 @@
 import java.util.HashSet;
 import java.util.Set;
 import org.javers.core.metamodel.annotation.ShallowReference;
+import org.mskcc.oncokb.curation.domain.Association.Association;
+import org.mskcc.oncokb.curation.domain.ClinicalTrialArm.ClinicalTrialArm;
+import org.mskcc.oncokb.curation.domain.EligibilityCriteria.EligibilityCriteria;
 
 /**
  * A ClinicalTrial.

diff --git a/...okb/curation/domain/ClinicalTrialArm.java → ...in/ClinicalTrialArm/ClinicalTrialArm.java b/...okb/curation/domain/ClinicalTrialArm.java → ...in/ClinicalTrialArm/ClinicalTrialArm.java
@@ -1,4 +1,4 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.ClinicalTrialArm;
 
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import jakarta.persistence.*;
@@ -7,6 +7,8 @@
 import java.util.HashSet;
 import java.util.Set;
 import org.javers.core.metamodel.annotation.ShallowReference;
+import org.mskcc.oncokb.curation.domain.Association.Association;
+import org.mskcc.oncokb.curation.domain.ClinicalTrial.ClinicalTrial;
 
 /**
  * A ClinicalTrialArm.

diff --git a/...ion/domain/CompanionDiagnosticDevice.java → ...sticDevice/CompanionDiagnosticDevice.java b/...ion/domain/CompanionDiagnosticDevice.java → ...sticDevice/CompanionDiagnosticDevice.java
@@ -1,4 +1,4 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.CompanionDiagnosticDevice;
 
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import jakarta.persistence.*;
@@ -8,6 +8,8 @@
 import java.util.HashSet;
 import java.util.Set;
 import org.javers.core.metamodel.annotation.ShallowReference;
+import org.mskcc.oncokb.curation.domain.FdaSubmission.FdaSubmission;
+import org.mskcc.oncokb.curation.domain.SpecimenType.SpecimenType;
 
 /**
  * A CompanionDiagnosticDevice.

diff --git a/...c/oncokb/curation/domain/Consequence.java → ...ation/domain/Consequence/Consequence.java b/...c/oncokb/curation/domain/Consequence.java → ...ation/domain/Consequence/Consequence.java
@@ -1,4 +1,4 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.Consequence;
 
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import jakarta.persistence.*;
@@ -7,6 +7,8 @@
 import java.util.HashSet;
 import java.util.Set;
 import org.javers.core.metamodel.annotation.DiffIgnore;
+import org.mskcc.oncokb.curation.domain.Alteration.Alteration;
+import org.mskcc.oncokb.curation.domain.CategoricalAlteration.CategoricalAlteration;
 
 /**
  * A Consequence.

diff --git a/...rg/mskcc/oncokb/curation/domain/Drug.java → ...kcc/oncokb/curation/domain/Drug/Drug.java b/...rg/mskcc/oncokb/curation/domain/Drug.java → ...kcc/oncokb/curation/domain/Drug/Drug.java
@@ -1,4 +1,4 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.Drug;
 
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import jakarta.persistence.*;
@@ -8,6 +8,10 @@
 import java.util.Set;
 import org.javers.core.metamodel.annotation.DiffIgnore;
 import org.javers.core.metamodel.annotation.ShallowReference;
+import org.mskcc.oncokb.curation.domain.Association.Association;
+import org.mskcc.oncokb.curation.domain.FdaDrug.FdaDrug;
+import org.mskcc.oncokb.curation.domain.Flag.Flag;
+import org.mskcc.oncokb.curation.domain.NciThesaurus.NciThesaurus;
 
 /**
  * A Drug.

diff --git a/.../curation/domain/EligibilityCriteria.java → ...gibilityCriteria/EligibilityCriteria.java b/.../curation/domain/EligibilityCriteria.java → ...gibilityCriteria/EligibilityCriteria.java
@@ -1,4 +1,4 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.EligibilityCriteria;
 
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import jakarta.persistence.*;
@@ -8,6 +8,8 @@
 import java.util.Set;
 import org.javers.core.metamodel.annotation.DiffIgnore;
 import org.javers.core.metamodel.annotation.ShallowReference;
+import org.mskcc.oncokb.curation.domain.Association.Association;
+import org.mskcc.oncokb.curation.domain.ClinicalTrial.ClinicalTrial;
 import org.mskcc.oncokb.curation.domain.enumeration.EligibilityCriteriaType;
 
 /**

diff --git a/...c/oncokb/curation/domain/EnsemblGene.java → ...ation/domain/EnsemblGene/EnsemblGene.java b/...c/oncokb/curation/domain/EnsemblGene.java → ...ation/domain/EnsemblGene/EnsemblGene.java
@@ -1,4 +1,4 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.EnsemblGene;
 
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import jakarta.persistence.*;
@@ -7,6 +7,9 @@
 import java.util.HashSet;
 import java.util.Set;
 import org.javers.core.metamodel.annotation.ShallowReference;
+import org.mskcc.oncokb.curation.domain.Gene.Gene;
+import org.mskcc.oncokb.curation.domain.SeqRegion.SeqRegion;
+import org.mskcc.oncokb.curation.domain.Transcript.Transcript;
 import org.mskcc.oncokb.curation.domain.enumeration.ReferenceGenome;
 
 /**

diff --git a/.../oncokb/curation/domain/EntityStatus.java → ...ion/domain/EntityStatus/EntityStatus.java b/.../oncokb/curation/domain/EntityStatus.java → ...ion/domain/EntityStatus/EntityStatus.java
@@ -1,4 +1,4 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.EntityStatus;
 
 import org.mskcc.oncokb.curation.domain.enumeration.EntityStatusType;
 

diff --git a/...skcc/oncokb/curation/domain/Evidence.java → ...kb/curation/domain/Evidence/Evidence.java b/...skcc/oncokb/curation/domain/Evidence.java → ...kb/curation/domain/Evidence/Evidence.java
@@ -1,4 +1,4 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.Evidence;
 
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import jakarta.persistence.*;
@@ -8,6 +8,9 @@
 import java.util.Set;
 import org.javers.core.metamodel.annotation.DiffIgnore;
 import org.javers.core.metamodel.annotation.ShallowReference;
+import org.mskcc.oncokb.curation.domain.Association.Association;
+import org.mskcc.oncokb.curation.domain.Gene.Gene;
+import org.mskcc.oncokb.curation.domain.LevelOfEvidence.LevelOfEvidence;
 
 /**
  * A Evidence.

diff --git a/...mskcc/oncokb/curation/domain/FdaDrug.java → ...cokb/curation/domain/FdaDrug/FdaDrug.java b/...mskcc/oncokb/curation/domain/FdaDrug.java → ...cokb/curation/domain/FdaDrug/FdaDrug.java
@@ -1,4 +1,4 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.FdaDrug;
 
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import jakarta.persistence.*;
@@ -7,6 +7,8 @@
 import java.util.HashSet;
 import java.util.Set;
 import org.javers.core.metamodel.annotation.ShallowReference;
+import org.mskcc.oncokb.curation.domain.Drug.Drug;
+import org.mskcc.oncokb.curation.domain.FdaSubmission.FdaSubmission;
 
 /**
  * A FdaDrug.

diff --git a/...oncokb/curation/domain/FdaSubmission.java → ...n/domain/FdaSubmission/FdaSubmission.java b/...oncokb/curation/domain/FdaSubmission.java → ...n/domain/FdaSubmission/FdaSubmission.java
@@ -1,4 +1,4 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.FdaSubmission;
 
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import jakarta.persistence.*;
@@ -9,6 +9,11 @@
 import java.util.Set;
 import org.javers.core.metamodel.annotation.DiffIgnore;
 import org.javers.core.metamodel.annotation.ShallowReference;
+import org.mskcc.oncokb.curation.domain.Article.Article;
+import org.mskcc.oncokb.curation.domain.Association.Association;
+import org.mskcc.oncokb.curation.domain.CompanionDiagnosticDevice.CompanionDiagnosticDevice;
+import org.mskcc.oncokb.curation.domain.FdaDrug.FdaDrug;
+import org.mskcc.oncokb.curation.domain.FdaSubmissionType.FdaSubmissionType;
 
 /**
  * A FdaSubmission.

diff --git a/...kb/curation/domain/FdaSubmissionType.java → .../FdaSubmissionType/FdaSubmissionType.java b/...kb/curation/domain/FdaSubmissionType.java → .../FdaSubmissionType/FdaSubmissionType.java
@@ -1,4 +1,4 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.FdaSubmissionType;
 
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import jakarta.persistence.*;
@@ -7,6 +7,7 @@
 import java.util.HashSet;
 import java.util.Set;
 import org.javers.core.metamodel.annotation.DiffIgnore;
+import org.mskcc.oncokb.curation.domain.FdaSubmission.FdaSubmission;
 import org.mskcc.oncokb.curation.domain.enumeration.FdaSubmissionTypeKey;
 
 /**

diff --git a/...rg/mskcc/oncokb/curation/domain/Flag.java → ...kcc/oncokb/curation/domain/Flag/Flag.java b/...rg/mskcc/oncokb/curation/domain/Flag.java → ...kcc/oncokb/curation/domain/Flag/Flag.java
@@ -1,4 +1,4 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.Flag;
 
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import jakarta.persistence.*;
@@ -8,6 +8,11 @@
 import java.util.Set;
 import org.javers.core.metamodel.annotation.DiffIgnore;
 import org.javers.core.metamodel.annotation.ShallowReference;
+import org.mskcc.oncokb.curation.domain.Alteration.Alteration;
+import org.mskcc.oncokb.curation.domain.Article.Article;
+import org.mskcc.oncokb.curation.domain.Drug.Drug;
+import org.mskcc.oncokb.curation.domain.Gene.Gene;
+import org.mskcc.oncokb.curation.domain.Transcript.Transcript;
 
 /**
  * A Flag.

diff --git a/...rg/mskcc/oncokb/curation/domain/Gene.java → ...kcc/oncokb/curation/domain/Gene/Gene.java b/...rg/mskcc/oncokb/curation/domain/Gene.java → ...kcc/oncokb/curation/domain/Gene/Gene.java
@@ -1,4 +1,4 @@
-package org.mskcc.oncokb.curation.domain;
+package org.mskcc.oncokb.curation.domain.Gene;
 
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import jakarta.persistence.*;
@@ -8,6 +8,12 @@
 import java.util.Set;
 import org.javers.core.metamodel.annotation.DiffIgnore;
 import org.javers.core.metamodel.annotation.ShallowReference;
+import org.mskcc.oncokb.curation.domain.Alteration.Alteration;
+import org.mskcc.oncokb.curation.domain.EnsemblGene.EnsemblGene;
+import org.mskcc.oncokb.curation.domain.Evidence.Evidence;
+import org.mskcc.oncokb.curation.domain.Flag.Flag;
+import org.mskcc.oncokb.curation.domain.Synonym.Synonym;
+import org.mskcc.oncokb.curation.domain.Transcript.Transcript;
 
 /**
  * A Gene.