Merge branch 'develop' into beta

.github/workflows/codeql-analysis.yml

@@ -0,0 +1,24 @@
+name: "CodeQL Analysis"
+on:
+  push:
+    branches: [ main, beta, develop ]
+  pull_request:
+    branches: [ main ]
+
+jobs:
+  analyze:
+    name: Analyze
+    runs-on: ubuntu-latest
+
+    steps:
+    - name: Checkout repository
+      uses: actions/checkout@v2
+
+    - name: Initialize CodeQL
+      uses: github/codeql-action/init@v1
+      with:
+        languages: python
+
+    - name: Perform CodeQL Analysis
+      uses: github/codeql-action/analyze@v1
+

.github/workflows/update_wiki.yml

@@ -5,9 +5,9 @@ on:
   push:
     # Trigger only when wiki directory changes
     paths:
-      - 'wiki/**'
+      - 'wiki/pages/**'
 
-    # Trigger only on main/beta
+    # Trigger only on main
     branches: [ main ]
 
 jobs:
@@ -16,10 +16,35 @@ jobs:
     steps:
     - uses: actions/checkout@v2
 
+    - name: Setup Python
+      uses: actions/setup-python@v2
+      with:
+        python-version: ${{ matrix.python-version }}
+
+    - name: Install tools to build whl package
+      run: |
+        pip install sdist
+
+    - name: Build whl package
+      run: |
+        python setup.py sdist bdist_wheel
+      env:
+        SEMANTIC_VERSION: 1.0.0   # not actually 1.0.0, but has no impact on wiki-building
+
+    - name: Install do-calculus package
+      run: |
+        pip install -e .
+      env:
+        SEMANTIC_VERSION: 1.0.0   # not actually 1.0.0, but has no impact on wiki-building
+
+    - name: Build Pages (replace stubs)
+      run: |
+        python ./wiki/build_wiki.py
+
     - name: Push Wiki Changes
       uses: Andrew-Chen-Wang/github-wiki-action@v2
       env:
-        WIKI_DIR: docs/
+        WIKI_DIR: wiki/pages/
         GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
         GH_MAIL: ${{ secrets.EMAIL }}
         GH_NAME: ${{ github.repository_owner }}

do/probability/shpitser/Shpitser.py → debug/Shpitser.py

@@ -7,7 +7,7 @@
 #                                                       #
 #########################################################
 
-from src.probability.shpitser.identification.IDAlgorithm import ID
+from identification.IDAlgorithm import ID
 from src.probability.shpitser.identification.IDProcessing import parse_shpitser
 from src.probability.shpitser.latent.LatentProjection import latent_projection
 from src.probability.shpitser.structures.Distribution import Distribution

debug/scrap.py

@@ -0,0 +1,26 @@
+from pathlib import Path
+from do.structures.Graph import Graph
+from yaml import safe_dump
+
+from gen_distribution import generate_distribution
+
+V = {"U1", "U2", "U3", "A", "B", "X", "Z", "W", "Y"}
+E = {
+    ("U1", "A"), ("U1", "X"),
+    ("U2", "A"), ("U2", "Y"),
+    ("U3", "X"), ("U3", "W"),
+    ("A", "B"), ("B", "X"), ("X", "Z"), ("X", "W"), ("Z", "Y"), ("W", "Y")
+}
+
+G = Graph(V, E)
+
+distribution = generate_distribution(G)
+
+P = Path(".", "shpitser2a.yml")
+
+with P.open("w") as f:
+    safe_dump({
+        "name": "Shpitser Figure 2a",
+        "model": distribution
+
+    }, f)