Add SSSOM and RDF outputs (#29)

This PR adds two new output formats: | Format | File | Description | |--------|----------------------------------------------|---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | SSSOM | [tiwid.sssom.tsv](https://github.com/bridgedb/tiwid/blob/more-outputs/artifacts/tiwid.sssom.tsv) | An output in the [Simple Standard for Sharing Ontological Mappings (SSSOM)](https://mapping-commons.github.io/sssom/) format | | RDF | [tiwid.ttl](https://github.com/bridgedb/tiwid/blob/more-outputs/artifacts/tiwid.ttl) | An output in RDF, serialized with Turtle. This file can be readily converted to an OWL ontology with [ROBOT](https://robot.obolibrary.org/) with `robot convert -i tiwid.ttl -o tiwid.owl`. | It also makes minor updates to the README, such as noting that the data is standardized on Bioregistry and not Identifiers.org (though, effectively this is the same thing)
bridgedb · Jan 8, 2025 · 8fbee9a · 8fbee9a
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diff --git a/README.md b/README.md
@@ -5,7 +5,7 @@
 
 This project collects identifiers that are, for some reason, no longer pointing to active records
 in the corresponding database. As such, these identifiers should no longer be used. By collecting
-them in a machine readable way, we can make it easier to automate the detection of dead identifiers
+them in a machine-readable way, we can make it easier to automate the detection of dead identifiers
 in data curation workflows.
 
 The following is a short summary of the contents of this resource:
@@ -15,7 +15,7 @@ The following is a short summary of the contents of this resource:
 ## Data
 
 The data in the `data` folder is structured like as follows. Filenames follow the namespace of
-the resources as defined by identifiers.org and used in compact identifiers. The content of
+the resources as defined by the Bioregistry and used in compact URIs. The content of
 the file is a comma-separated values file with one or more columns:
 
 * `#did`: the dead identifier
@@ -24,7 +24,15 @@ the file is a comma-separated values file with one or more columns:
 
 This model is incomplete and volatile, but applies to Release 1.
 
-A collation of all curations can be found in [`artifacts/collated.tsv`](artifacts/collated.tsv).
+## Outputs
+
+Automatically generated artifacts can be found in the [`artifacts`](artifacts) folder.
+
+| Format | File                                         | Description                                                                                                                                                                                 |
+|--------|----------------------------------------------|---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
+| TSV    | [collated.tsv](artifacts/collated.tsv)       | A collated version of all TSV in the [data/](data) folder                                                                                                                                   |
+| SSSOM  | [tiwid.sssom.tsv](artifacts/tiwid.sssom.tsv) | An output in the [Simple Standard for Sharing Ontological Mappings (SSSOM)](https://mapping-commons.github.io/sssom/) format                                                                |
+| RDF    | [tiwid.ttl](artifacts/tiwid.ttl)             | An output in RDF, serialized with Turtle. This file can be readily converted to an OWL ontology with [ROBOT](https://robot.obolibrary.org/) with `robot convert -i tiwid.ttl -o tiwid.owl`. |
 
 ## Tests