v0.3.0 #189
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v0.3.0 #189
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Fixed a bug in report generated by a previous change in saving
It seems the inclusion of 'css_files' in the build context is over-writing the default CSS stylesheets that are supposed to be there. I don't know if this is a readthedocs bug, but it used to work...
Everything seems to be working on a simulated dataset
* gaussian_kde peak to find empty drop prior, rather than mode with heuristics
* Improve cell prob plot and remove features not analyzed This was very confusing and led to what looked like a horrible bug: disagreement between the HTML report plot and the PDF plot. But it's because the report was plotting all features, not just features analyzed. The report now also plots features analyzed * Refactor sparse utils and eliminate duplication * Add multiprocessing MCKP estimation as command line option On Mac laptop this is not faster in small tests
…ilities (#202) * Implement soft constraints on cell probs
Because sometimes there are memory issues, apparently
* Mean and MAP estimator potential speedup * Save posterior as HDF5 rather than NPZ * Fix intermittent cellbender checkpoint test failure issue * Change default low_count_threshold to 5 * Attempt to preclude intermittent google workflow errors in WDL
and prevent writing the file twice
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Abandoned in favor of #238 |
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This is a major update to v0.3.0, with several big changes from v0.2.0 that will hopefully
Closes #5 , #7 , #38 , #68 , #80 , #84 , #85 , #87 , #93 , #95 , #97 , #98 , #99 , #105 , #107 , #119 , #121 , #123 , #124 , #128 , #141 , #146 , #150 , #156 , #160 , #180 , #184 , #190 , #191 , #205 , #207 , #209
(a few more to be added...)