picard 2.25.4 -> 2.25.5 (#73)

* picard 2.25.4 -> 2.25.5 * change value expected by test test_tools_minimap2.py::TestToolMinimap2::test_ebola_bam
broadinstitute · Jun 4, 2021 · ad3e799 · ad3e799
1 parent cd04b56
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diff --git a/requirements-conda.txt b/requirements-conda.txt
@@ -13,7 +13,7 @@ minimap2>=2.17
 mvicuna=1.0
 novoalign=3.09.04
 parallel>=20190922
-picard=2.25.4
+picard=2.25.5
 pigz=2.4
 prinseq=0.20.4
 samtools>=1.12

diff --git a/test/unit/test_tools_minimap2.py b/test/unit/test_tools_minimap2.py
@@ -31,7 +31,7 @@ def test_ebola_bam(self):
         ref_fasta = os.path.join(util.file.get_test_input_path(), 'ebov-makona.fasta')
         with util.file.tempfname('.bam') as outfile:
             self.mm2.align_bam(in_bam, ref_fasta, outfile)
-            self.assertEqual(self.samtools.count(outfile), 18843)
+            self.assertEqual(self.samtools.count(outfile), 18825)
 
     def test_corrupt_bam(self):
         # pipe.poll() should raise an exception