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| # Changelog | ||
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| ## [0.1.0](https://github.com/brsynth/galaxytools/tree/0.1.0) (2023-05-17) | ||
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| [Full Changelog](https://github.com/brsynth/galaxytools/compare/55db1c4095f1833e0122c5e1e8cf1df82fab81b6...0.1.0) | ||
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| **Merged pull requests:** | ||
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| - fix: XDG\_CACHE\_HOME [\#113](https://github.com/brsynth/galaxytools/pull/113) ([breakthewall](https://github.com/breakthewall)) | ||
| - Fix rptools - rpthermo: locate cache dir [\#112](https://github.com/brsynth/galaxytools/pull/112) ([guillaume-gricourt](https://github.com/guillaume-gricourt)) | ||
| - Fix straindesign: testtoolshed [\#111](https://github.com/brsynth/galaxytools/pull/111) ([guillaume-gricourt](https://github.com/guillaume-gricourt)) | ||
| - Updating sbol3\_diff from version 1.0a16 to 1.0a17 [\#110](https://github.com/brsynth/galaxytools/pull/110) ([guillaume-gricourt](https://github.com/guillaume-gricourt)) | ||
| - Updating sbol\_converter from version 1.0a16 to 1.0a17 [\#109](https://github.com/brsynth/galaxytools/pull/109) ([guillaume-gricourt](https://github.com/guillaume-gricourt)) | ||
| - sbol\_converter: add citation tag [\#108](https://github.com/brsynth/galaxytools/pull/108) ([guillaume-gricourt](https://github.com/guillaume-gricourt)) | ||
| - Feat\(get sbml model\) [\#107](https://github.com/brsynth/galaxytools/pull/107) ([breakthewall](https://github.com/breakthewall)) | ||
| - chore\(deps\): bump github/super-linter from 4 to 5 [\#106](https://github.com/brsynth/galaxytools/pull/106) ([dependabot[bot]](https://github.com/apps/dependabot)) | ||
| - feat\(get\_sbml\_model\) [\#105](https://github.com/brsynth/galaxytools/pull/105) ([breakthewall](https://github.com/breakthewall)) | ||
| - Shed lint [\#104](https://github.com/brsynth/galaxytools/pull/104) ([guillaume-gricourt](https://github.com/guillaume-gricourt)) | ||
| - Updating rpbasicdesign from version 1.1.0 to 1.2.2 [\#103](https://github.com/brsynth/galaxytools/pull/103) ([guillaume-gricourt](https://github.com/guillaume-gricourt)) | ||
| - retropath2\_wrapper - Id retropath2 ambiguous [\#102](https://github.com/brsynth/galaxytools/pull/102) ([guillaume-gricourt](https://github.com/guillaume-gricourt)) | ||
| - Updating retropath2\_wrapper from version 3.0.0 to 3.0.1 [\#101](https://github.com/brsynth/galaxytools/pull/101) ([guillaume-gricourt](https://github.com/guillaume-gricourt)) | ||
| - fix\(github\): workflow syntax [\#97](https://github.com/brsynth/galaxytools/pull/97) ([guillaume-gricourt](https://github.com/guillaume-gricourt)) | ||
| - chore\(github\): enable autoupdate [\#96](https://github.com/brsynth/galaxytools/pull/96) ([guillaume-gricourt](https://github.com/guillaume-gricourt)) | ||
| - Refactor repository [\#95](https://github.com/brsynth/galaxytools/pull/95) ([guillaume-gricourt](https://github.com/guillaume-gricourt)) | ||
| - feat\(retropath2\_wrapper\): update to 3.0.0 [\#94](https://github.com/brsynth/galaxytools/pull/94) ([guillaume-gricourt](https://github.com/guillaume-gricourt)) | ||
| - feat\(rrpser\): update [\#93](https://github.com/brsynth/galaxytools/pull/93) ([guillaume-gricourt](https://github.com/guillaume-gricourt)) | ||
| - fix\(get\_sbml\_model\): output fmt [\#92](https://github.com/brsynth/galaxytools/pull/92) ([guillaume-gricourt](https://github.com/guillaume-gricourt)) | ||
| - feat\(rp2paths\): output format [\#91](https://github.com/brsynth/galaxytools/pull/91) ([guillaume-gricourt](https://github.com/guillaume-gricourt)) | ||
| - Doe synbio [\#90](https://github.com/brsynth/galaxytools/pull/90) ([guillaume-gricourt](https://github.com/guillaume-gricourt)) | ||
| - rptools [\#89](https://github.com/brsynth/galaxytools/pull/89) ([guillaume-gricourt](https://github.com/guillaume-gricourt)) | ||
| - Icfree [\#88](https://github.com/brsynth/galaxytools/pull/88) ([guillaume-gricourt](https://github.com/guillaume-gricourt)) | ||
| - Sbol3 diff [\#87](https://github.com/brsynth/galaxytools/pull/87) ([kenza12](https://github.com/kenza12)) | ||
| - style\(rpranker\): add single quotes and element\_identifier [\#86](https://github.com/brsynth/galaxytools/pull/86) ([kenza12](https://github.com/kenza12)) | ||
| - feat\(rptools\): add one common macro file and test only content in rpt… [\#85](https://github.com/brsynth/galaxytools/pull/85) ([kenza12](https://github.com/kenza12)) | ||
| - Iuc rptools [\#84](https://github.com/brsynth/galaxytools/pull/84) ([kenza12](https://github.com/kenza12)) | ||
| - Iuc rp2biosensor [\#83](https://github.com/brsynth/galaxytools/pull/83) ([kenza12](https://github.com/kenza12)) | ||
| - Iuc lcrgenie [\#82](https://github.com/brsynth/galaxytools/pull/82) ([kenza12](https://github.com/kenza12)) | ||
| - Iuc dnaweaver [\#81](https://github.com/brsynth/galaxytools/pull/81) ([kenza12](https://github.com/kenza12)) | ||
| - Update rptools suite to 6.0.1 [\#80](https://github.com/brsynth/galaxytools/pull/80) ([kenza12](https://github.com/kenza12)) | ||
| - doc\(rpExtractSink\): add creator names and update rptools [\#79](https://github.com/brsynth/galaxytools/pull/79) ([kenza12](https://github.com/kenza12)) | ||
| - Iuc rpfba [\#78](https://github.com/brsynth/galaxytools/pull/78) ([kenza12](https://github.com/kenza12)) | ||
| - Iuc rpreport [\#77](https://github.com/brsynth/galaxytools/pull/77) ([kenza12](https://github.com/kenza12)) | ||
| - Iuc rpviz [\#76](https://github.com/brsynth/galaxytools/pull/76) ([kenza12](https://github.com/kenza12)) | ||
| - doc\(optdoe\): optimize name and def tool [\#75](https://github.com/brsynth/galaxytools/pull/75) ([kenza12](https://github.com/kenza12)) | ||
| - fix\(OptDoE\): remove duplicates from codon tables [\#74](https://github.com/brsynth/galaxytools/pull/74) ([kenza12](https://github.com/kenza12)) | ||
| - Iuc rpranker [\#73](https://github.com/brsynth/galaxytools/pull/73) ([kenza12](https://github.com/kenza12)) | ||
| - Iuc optdoe [\#72](https://github.com/brsynth/galaxytools/pull/72) ([kenza12](https://github.com/kenza12)) | ||
| - Iuc rpranker [\#71](https://github.com/brsynth/galaxytools/pull/71) ([kenza12](https://github.com/kenza12)) | ||
| - Test sbml2sbol \(IUC requests\) [\#70](https://github.com/brsynth/galaxytools/pull/70) ([kenza12](https://github.com/kenza12)) | ||
| - Add straindesign wrapper [\#69](https://github.com/brsynth/galaxytools/pull/69) ([guillaume-gricourt](https://github.com/guillaume-gricourt)) | ||
| - Iuc sbml2sbol [\#68](https://github.com/brsynth/galaxytools/pull/68) ([kenza12](https://github.com/kenza12)) | ||
| - Iuc rp2paths [\#67](https://github.com/brsynth/galaxytools/pull/67) ([kenza12](https://github.com/kenza12)) | ||
| - fix\(Retropath2\_wrapper\): fix writing in tool dir with kinstall option [\#66](https://github.com/brsynth/galaxytools/pull/66) ([kenza12](https://github.com/kenza12)) | ||
| - IUC rp2paths [\#65](https://github.com/brsynth/galaxytools/pull/65) ([kenza12](https://github.com/kenza12)) | ||
| - Iuc rpcompletion [\#64](https://github.com/brsynth/galaxytools/pull/64) ([kenza12](https://github.com/kenza12)) | ||
| - test\(sbol-converter\): add few tests and README [\#63](https://github.com/brsynth/galaxytools/pull/63) ([kenza12](https://github.com/kenza12)) | ||
| - feat\(sbol\_converter\): add sbol converter \(splitted wrappers\) [\#62](https://github.com/brsynth/galaxytools/pull/62) ([kenza12](https://github.com/kenza12)) | ||
| - feat\(sbol-converter\): add first release of sbol-converter wrapper [\#61](https://github.com/brsynth/galaxytools/pull/61) ([kenza12](https://github.com/kenza12)) | ||
| - Iuc retropath2 [\#60](https://github.com/brsynth/galaxytools/pull/60) ([kenza12](https://github.com/kenza12)) | ||
| - Iuc retropath2 [\#59](https://github.com/brsynth/galaxytools/pull/59) ([kenza12](https://github.com/kenza12)) | ||
| - feat\(rrparser\): update rrparser and add rules-dir option [\#58](https://github.com/brsynth/galaxytools/pull/58) ([kenza12](https://github.com/kenza12)) | ||
| - Iuc selenzy [\#57](https://github.com/brsynth/galaxytools/pull/57) ([kenza12](https://github.com/kenza12)) | ||
| - Iuc rpextractsink [\#56](https://github.com/brsynth/galaxytools/pull/56) ([kenza12](https://github.com/kenza12)) | ||
| - Iuc rrparser [\#55](https://github.com/brsynth/galaxytools/pull/55) ([kenza12](https://github.com/kenza12)) | ||
| - feat\(rpbasicdesign\): add missing max\_gene\_per\_construct parameter and… [\#54](https://github.com/brsynth/galaxytools/pull/54) ([kenza12](https://github.com/kenza12)) | ||
| - Update rpfba [\#53](https://github.com/brsynth/galaxytools/pull/53) ([kenza12](https://github.com/kenza12)) | ||
| - Iuc rp2paths [\#52](https://github.com/brsynth/galaxytools/pull/52) ([kenza12](https://github.com/kenza12)) | ||
| - Iuc dnabot [\#51](https://github.com/brsynth/galaxytools/pull/51) ([kenza12](https://github.com/kenza12)) | ||
| - Test dnabot [\#49](https://github.com/brsynth/galaxytools/pull/49) ([kenza12](https://github.com/kenza12)) | ||
| - Iuc rpbasicdesign [\#48](https://github.com/brsynth/galaxytools/pull/48) ([kenza12](https://github.com/kenza12)) | ||
| - Test rpbasicdesign [\#47](https://github.com/brsynth/galaxytools/pull/47) ([kenza12](https://github.com/kenza12)) | ||
| - test\(rp2biosensor\): add sink test file and update to 3.1.0 [\#46](https://github.com/brsynth/galaxytools/pull/46) ([kenza12](https://github.com/kenza12)) | ||
| - Test rpbasicdesign [\#45](https://github.com/brsynth/galaxytools/pull/45) ([kenza12](https://github.com/kenza12)) | ||
| - feat\(rp2biosensor\): add input sink file and upgrade to 3.0.0 [\#44](https://github.com/brsynth/galaxytools/pull/44) ([kenza12](https://github.com/kenza12)) | ||
| - Test rp2biosensor [\#43](https://github.com/brsynth/galaxytools/pull/43) ([kenza12](https://github.com/kenza12)) | ||
| - Test dnabot [\#42](https://github.com/brsynth/galaxytools/pull/42) ([kenza12](https://github.com/kenza12)) | ||
| - feat: add rp\_fba\_analysis [\#41](https://github.com/brsynth/galaxytools/pull/41) ([guillaume-gricourt](https://github.com/guillaume-gricourt)) | ||
| - Test rpreport [\#40](https://github.com/brsynth/galaxytools/pull/40) ([kenza12](https://github.com/kenza12)) | ||
| - Test rpranker [\#39](https://github.com/brsynth/galaxytools/pull/39) ([kenza12](https://github.com/kenza12)) | ||
| - Test rpscore [\#38](https://github.com/brsynth/galaxytools/pull/38) ([kenza12](https://github.com/kenza12)) | ||
| - Test rpcompletion [\#37](https://github.com/brsynth/galaxytools/pull/37) ([kenza12](https://github.com/kenza12)) | ||
| - Test sbml2sbol [\#36](https://github.com/brsynth/galaxytools/pull/36) ([kenza12](https://github.com/kenza12)) | ||
| - Test rpextractsink [\#35](https://github.com/brsynth/galaxytools/pull/35) ([kenza12](https://github.com/kenza12)) | ||
| - Test rpthermo [\#34](https://github.com/brsynth/galaxytools/pull/34) ([kenza12](https://github.com/kenza12)) | ||
| - Test selenzy [\#33](https://github.com/brsynth/galaxytools/pull/33) ([kenza12](https://github.com/kenza12)) | ||
| - test\(retropath2\): update test section with small inputs [\#32](https://github.com/brsynth/galaxytools/pull/32) ([kenza12](https://github.com/kenza12)) | ||
| - Test retropath2 [\#31](https://github.com/brsynth/galaxytools/pull/31) ([kenza12](https://github.com/kenza12)) | ||
| - Test dnaweaver [\#30](https://github.com/brsynth/galaxytools/pull/30) ([kenza12](https://github.com/kenza12)) | ||
| - Feat inchi to sink [\#29](https://github.com/brsynth/galaxytools/pull/29) ([kenza12](https://github.com/kenza12)) | ||
| - test\(LCRGenie\): update test section [\#28](https://github.com/brsynth/galaxytools/pull/28) ([kenza12](https://github.com/kenza12)) | ||
| - Test optdoe [\#27](https://github.com/brsynth/galaxytools/pull/27) ([kenza12](https://github.com/kenza12)) | ||
| - Test rrparser [\#26](https://github.com/brsynth/galaxytools/pull/26) ([kenza12](https://github.com/kenza12)) | ||
| - fix\(rpFBA\): fix objective\_rxn\_id parameter name [\#25](https://github.com/brsynth/galaxytools/pull/25) ([kenza12](https://github.com/kenza12)) | ||
| - Feat inchi to sink [\#24](https://github.com/brsynth/galaxytools/pull/24) ([kenza12](https://github.com/kenza12)) | ||
| - Test rpfba [\#23](https://github.com/brsynth/galaxytools/pull/23) ([kenza12](https://github.com/kenza12)) | ||
| - Feat rpfba [\#22](https://github.com/brsynth/galaxytools/pull/22) ([kenza12](https://github.com/kenza12)) | ||
| - Test rpfba [\#21](https://github.com/brsynth/galaxytools/pull/21) ([kenza12](https://github.com/kenza12)) | ||
| - Test get sbml model [\#20](https://github.com/brsynth/galaxytools/pull/20) ([kenza12](https://github.com/kenza12)) | ||
| - Test rpextractsink [\#19](https://github.com/brsynth/galaxytools/pull/19) ([kenza12](https://github.com/kenza12)) | ||
| - Feat rp2biosensor [\#18](https://github.com/brsynth/galaxytools/pull/18) ([kenza12](https://github.com/kenza12)) | ||
| - Test rpextractsink [\#17](https://github.com/brsynth/galaxytools/pull/17) ([kenza12](https://github.com/kenza12)) | ||
| - Test rpextractsink [\#16](https://github.com/brsynth/galaxytools/pull/16) ([kenza12](https://github.com/kenza12)) | ||
| - Test partsgenie [\#15](https://github.com/brsynth/galaxytools/pull/15) ([kenza12](https://github.com/kenza12)) | ||
| - Test lcr genie [\#14](https://github.com/brsynth/galaxytools/pull/14) ([kenza12](https://github.com/kenza12)) | ||
| - Test dnaweaver [\#13](https://github.com/brsynth/galaxytools/pull/13) ([kenza12](https://github.com/kenza12)) | ||
| - Test optdoe [\#12](https://github.com/brsynth/galaxytools/pull/12) ([kenza12](https://github.com/kenza12)) | ||
| - Test selenzy wrapper [\#11](https://github.com/brsynth/galaxytools/pull/11) ([kenza12](https://github.com/kenza12)) | ||
| - Test rprank [\#10](https://github.com/brsynth/galaxytools/pull/10) ([kenza12](https://github.com/kenza12)) | ||
| - Feat rpviz [\#9](https://github.com/brsynth/galaxytools/pull/9) ([kenza12](https://github.com/kenza12)) | ||
| - feat\(dnabot\): output a tar file and update data tests [\#8](https://github.com/brsynth/galaxytools/pull/8) ([kenza12](https://github.com/kenza12)) | ||
| - Test sbml2sbol [\#7](https://github.com/brsynth/galaxytools/pull/7) ([kenza12](https://github.com/kenza12)) | ||
| - test\(rpscore\): add test section and data tests [\#6](https://github.com/brsynth/galaxytools/pull/6) ([kenza12](https://github.com/kenza12)) | ||
| - Feat dnabot [\#5](https://github.com/brsynth/galaxytools/pull/5) ([kenza12](https://github.com/kenza12)) | ||
| - test\(rp2paths\): update data tests and test section [\#4](https://github.com/brsynth/galaxytools/pull/4) ([kenza12](https://github.com/kenza12)) | ||
| - Test rpthermo [\#3](https://github.com/brsynth/galaxytools/pull/3) ([kenza12](https://github.com/kenza12)) | ||
| - Test rpfba [\#2](https://github.com/brsynth/galaxytools/pull/2) ([kenza12](https://github.com/kenza12)) | ||
| - Test rpcompletion [\#1](https://github.com/brsynth/galaxytools/pull/1) ([kenza12](https://github.com/kenza12)) | ||
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| \* *This Changelog was automatically generated by [github_changelog_generator](https://github.com/github-changelog-generator/github-changelog-generator)* |