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@cbg-ethz

Computational Biology Group (CBG)

Beerenwinkel Lab at ETH Zurich

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  1. V-pipe V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    Jupyter Notebook 134 47

Repositories

Showing 10 of 105 repositories
  • sr2silo Public

    Wrangling short-read sequencing data for import into SILO

    cbg-ethz/sr2silo’s past year of commit activity
    Python 1 MIT 0 19 (1 issue needs help) 2 Updated Feb 19, 2025
  • mt-SCITE Public

    Tree inference from mitochondrial mutations

    cbg-ethz/mt-SCITE’s past year of commit activity
    Jupyter Notebook 4 1 0 0 Updated Feb 19, 2025
  • covvfit Public

    Fitness estimates of SARS-CoV-2 variants

    cbg-ethz/covvfit’s past year of commit activity
    Python 0 MIT 0 6 3 Updated Feb 18, 2025
  • smallgenomeutilities Public

    smallgenomeutilities is a collection of Python scripts to convert alignments between different reference genomes.

    cbg-ethz/smallgenomeutilities’s past year of commit activity
    Python 10 GPL-2.0 7 4 2 Updated Feb 18, 2025
  • pangolin Public

    BSSE COVID-19 sequencing of test swab samples

    cbg-ethz/pangolin’s past year of commit activity
    Shell 7 3 2 2 Updated Feb 17, 2025
  • LolliPop Public

    Deconvolution for Wastewater Genomics

    cbg-ethz/LolliPop’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 1 2 0 Updated Feb 11, 2025
  • lollipop-in-cloud Public

    On the fly variant deconvolution running in the cloud for on demand user requests.

    cbg-ethz/lollipop-in-cloud’s past year of commit activity
    Python 0 0 0 0 Updated Feb 10, 2025
  • FiTree Public

    FiTree: Bayesian inference of fitness landscapes via tree-structured branching processes

    cbg-ethz/FiTree’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Feb 6, 2025
  • CTC-SCITE Public

    Computational method and analyses to study the clonality of circulating tumor cell clusters

    cbg-ethz/CTC-SCITE’s past year of commit activity
    C++ 2 GPL-3.0 1 3 0 Updated Feb 5, 2025
  • vpipe-biohack24-frontend Public

    Cloudification of V-Pipe: Frontend for the Biohackathon 2024

    cbg-ethz/vpipe-biohack24-frontend’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Jan 27, 2025
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