Add screenshot of surforama using cz cdp data

cellcanvas · Sep 12, 2024 · c550976 · c550976
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diff --git a/docs/surforama_data_portal_002.png b/docs/surforama_data_portal_002.png
diff --git a/docs/surforama_data_portal_002_light.png b/docs/surforama_data_portal_002_light.png
diff --git a/docs/surforama_for_data_portal.md b/docs/surforama_for_data_portal.md
@@ -2,6 +2,8 @@
 
 For this code to work you'll need to install `cryoet-data-portal` which you can do by following the installation instructions on [this site](https://chanzuckerberg.github.io/cryoet-data-portal/).
 
+![Screenshot of surforama with data from the dataportal](surforama_data_portal_002_light.png)
+
 ## Script
 
 This script will:
@@ -17,6 +19,7 @@ Once that has happened there are some interactive steps:
 - explore the surface of this section of membrane
 
 
+
 ```python
 import cryoet_data_portal as portal
 import zarr
@@ -84,6 +87,8 @@ viewer.add_image(g, scale=(4, 4, 4))
 viewer.add_labels(membrane, scale=(4, 4, 4))
 viewer.add_labels(third_largest_component_mask, scale=(4, 4, 4))
 
+# may need to use viewer.layers[-1].scale = (4, 4, 4)
+
 # Instantiate the Surforama widget
 surforama_widget = surforama.QtSurforama(viewer)
 viewer.window.add_dock_widget(surforama_widget, area="right", name="Surforama")