Python package

Updated signature of registerScans and moved inputCmdFile to end. Set… #386

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Run time

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Job	Run time
build (3.8)	33m 18s
build (3.9)	30m 23s
build (3.10)	31m 13s
build (3.11)	30m 51s
build (3.12)	31m 15s
	2h 37m 0s