release 0.9

Co-authored-by: Deborah Kornwolf <[email protected]>

.clang-format

@@ -1,5 +1,15 @@
 ---
-Language:        Cpp
-BasedOnStyle:  Google
+Language: Cpp
+BasedOnStyle: Google
 DerivePointerAlignment: false
 PointerAlignment: Left
+ColumnLimit: 100
+IncludeBlocks: Preserve
+AllowShortIfStatementsOnASingleLine: Never
+AllowShortLoopsOnASingleLine: False
+AllowShortBlocksOnASingleLine: Empty
+BreakBeforeBraces: Stroustrup
+AllowShortEnumsOnASingleLine: False
+AllowShortFunctionsOnASingleLine: Empty
+AllowShortCaseLabelsOnASingleLine: False
+

.clangd

@@ -0,0 +1,30 @@
+CompileFlags:
+  Add:
+    - -Wall
+    - -Wextra
+    # do not complain about features incompatible with sm_35
+    - --cuda-gpu-arch=sm_52
+  Remove:
+    - --expt-relaxed-constexpr
+    - --default-stream
+    - --generate-code=*
+    - --options-file
+    - -arch=*
+    - -forward-unknown-to-host-compiler
+    - -Xptxas=*
+    - -Xcompiler=*
+
+Diagnostics:
+  ClangTidy:
+    Add:
+      - bugprone-*
+      - performance-*
+    Remove:
+      - bugprone-macro-parentheses
+  UnusedIncludes: Strict
+  MissingIncludes: Strict
+  Includes:
+    IgnoreHeader:
+      - cub/.*
+      - cuda/.*
+      - glog/.*

.editorconfig

@@ -0,0 +1,11 @@
+# EditorConfig is awesome: https://EditorConfig.org
+
+# top-most EditorConfig file
+root = true
+
+[*]
+end_of_line = lf
+trim_trailing_whitespace = true
+insert_final_newline = true
+indent_style = space
+indent_size = 2

.github/workflows/ci.yaml

@@ -0,0 +1,55 @@
+name: Compile
+
+on:
+  workflow_dispatch:
+  pull_request:
+  push:
+    branches:
+      - master
+      - release*
+
+concurrency:
+  group: compile-${{ github.ref }}
+  cancel-in-progress: false
+
+jobs:
+  # Test the build with the latest CUDA toolkit and several Python versions
+  nvcc-ubuntu:
+    strategy:
+      fail-fast: false
+      matrix:
+        #python: ['3.8', '3.9', '3.10', '3.11', '3.12']
+        python: ['3.12']
+
+    name: "Python ${{ matrix.python }} / NVCC (CUDA 12.6.3) / ubuntu-latest"
+    runs-on: ubuntu-latest
+    # see https://hub.docker.com/r/nvidia/cuda
+    container: nvidia/cuda:12.6.3-devel-ubuntu24.04
+
+    steps:
+    - uses: actions/checkout@v4
+
+    - name: Install dependencies
+      run: apt-get update && DEBIAN_FRONTEND="noninteractive" apt-get install -y lsb-release unzip git && apt-get clean all
+
+    - name: Setup Python ${{ matrix.python }}
+      uses: actions/setup-python@v5
+      with:
+        python-version: ${{ matrix.python }}
+
+    - name: Install the latest CMake
+      uses: lukka/get-cmake@latest
+
+    - name: Install Nanobind
+      run: |
+        python -m pip install nanobind typing_extensions
+
+    - name: Configure
+      run: >
+        cmake -S . -B build
+
+    - name: Build C++
+      run: cmake --build build -j 2
+
+    - name: Build Wheel
+      run: python -m pip wheel .

.gitignore

@@ -1,12 +1,13 @@
-3rdparty/
-build/
-build_11/
-build_docker/
-build_local/
+build*/
 .vscode
 data/**
+evaluation/
+.idea/
 
-include/ggnn/alternatives
+run_Project.txt
+
+.cache
+.py-build-cmake_cache
 
 ### CMake ###
 CMakeLists.txt.user
@@ -21,43 +22,3 @@ compile_commands.json
 CTestTestfile.cmake
 _deps
 
-### CMake Patch ###
-# External projects
-*-prefix/
-
-### C++ ###
-# Prerequisites
-*.d
-
-# Compiled Object files
-*.slo
-*.lo
-*.o
-*.obj
-
-# Precompiled Headers
-*.gch
-*.pch
-
-# Compiled Dynamic libraries
-*.so
-*.dylib
-*.dll
-
-# Fortran module files
-*.mod
-*.smod
-
-# Compiled Static libraries
-*.lai
-*.la
-*.a
-*.lib
-
-# Executables
-*.exe
-*.out
-*.app
-
-
-cmake-build-debug

.readthedocs.yaml

@@ -0,0 +1,22 @@
+version: "2"
+
+build:
+  os: "ubuntu-22.04"
+  tools:
+    python: "3.10"
+
+python:
+  install:
+    - requirements: docs/requirements.txt
+    # Install our python package before building the docs
+    - method: pip
+      path: .
+
+sphinx:
+  configuration: docs/source/conf.py
+  fail_on_warning: true
+
+
+formats:
+  - pdf
+  - epub