feat: Add default value to false for code editor display (#29)

Closes CC-131

Add default value to false for code editor display

cryoet_data_portal_neuroglancer/models/json_generator.py

@@ -118,6 +118,7 @@ class ImageJSONGenerator(RenderingJSONGenerator):
     can_hide_high_values_in_neuroglancer: bool = False
     blend: str = "additive"
     opacity: float = 1.0
+    is_code_editor_visible: bool = False
 
     def __post_init__(self):
         self._type = RenderingTypes.IMAGE
@@ -168,6 +169,7 @@ def generate_json(self) -> dict:
             "visible": self.is_visible,
             "volumeRendering": "on" if self.volume_rendering_is_visible else "off",
             "volumeRenderingGain": self.volume_rendering_gain,
+            "codeVisible": self.is_code_editor_visible,
         }
         if self.has_volume_rendering_shader:
             config["volumeRenderingDepthSamples"] = self.volume_rendering_depth_samples
@@ -182,6 +184,7 @@ class AnnotationJSONGenerator(RenderingJSONGenerator):
     point_size_multiplier: float = 1.0
     is_instance_segmentation: bool = False
     is_visible: bool = True
+    is_code_editor_visible: bool = False
 
     def __post_init__(self):
         self._type = RenderingTypes.ANNOTATION
@@ -201,6 +204,7 @@ def generate_json(self) -> dict:
             "source": create_source(f"precomputed://{self.source}", self.scale, self.scale),
             "tab": "rendering",
             "visible": self.is_visible,
+            "codeVisible": self.is_code_editor_visible,
             **self._get_shader(),
         }
 

cryoet_data_portal_neuroglancer/state_generator.py

@@ -68,6 +68,7 @@ def generate_oriented_point_layer(
     scale: float | tuple[float, float, float] = (1.0, 1.0, 1.0),
     is_visible: bool = True,
     is_instance_segmentation: bool = False,
+    is_code_editor_visible: bool = False,
 ) -> dict[str, Any]:
     source, name, url, _, scale = _setup_creation(source, name, url, scale=scale)
     _validate_color(color)
@@ -80,6 +81,7 @@ def generate_oriented_point_layer(
         scale=scale,
         is_visible=is_visible,
         is_instance_segmentation=is_instance_segmentation,
+        is_code_editor_visible=is_code_editor_visible,
     ).to_json()
 
 
@@ -189,6 +191,7 @@ def generate_image_layer(
     can_hide_high_values_in_neuroglancer: bool | None = None,
     blend: str = "additive",
     opacity: float = 1.0,
+    is_code_editor_visible: bool = False,
 ) -> dict[str, Any]:
     """Generates JSON for an image layer with optional contrast limits.
 
@@ -217,6 +220,7 @@ def generate_image_layer(
         can_hide_high_values_in_neuroglancer=can_hide_high_values_in_neuroglancer,
         blend=blend,
         opacity=opacity,
+        is_code_editor_visible=is_code_editor_visible,
     ).to_json()
 
 

tests/test_state_generators.py

@@ -1,4 +1,9 @@
-from cryoet_data_portal_neuroglancer.state_generator import generate_image_layer, generate_segmentation_mask_layer
+from cryoet_data_portal_neuroglancer.state_generator import (
+    generate_image_layer,
+    generate_oriented_point_layer,
+    generate_point_layer,
+    generate_segmentation_mask_layer,
+)
 
 
 def test__generate_image_layer_default_values():
@@ -7,10 +12,26 @@ def test__generate_image_layer_default_values():
     assert "blend" in state
     assert state["blend"] == "additive"
     assert state["opacity"] == 1.0
+    assert "codeVisible" in state
+    assert state["codeVisible"] is False
 
 
 def test__generate_segmentation_layer_default_values():
     state = generate_segmentation_mask_layer(source="mysource")
 
     assert "pick" in state
     assert state["pick"] is False
+
+
+def test__generate_oriented_point_layer_default_values():
+    state = generate_oriented_point_layer(source="mysource")
+
+    assert "codeVisible" in state
+    assert state["codeVisible"] is False
+
+
+def test__generate_point_layer_default_values():
+    state = generate_point_layer(source="mysource")
+
+    assert "codeVisible" in state
+    assert state["codeVisible"] is False