Adding github workflows for deploy #93
Workflow file for this run
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name: Python cryoet_data_portal package unit tests | |
on: | |
pull_request: | |
paths: | |
- 'client/python/**' | |
- '.github/workflows/**' # Re-run if a workflow is modified - useful to test workflow changes in PRs | |
push: | |
branches: [main] | |
jobs: | |
unit_tests_python_client: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
os: [ubuntu-latest, macos-latest] | |
python-version: ['3.7', '3.8', '3.9', '3.10'] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python -m pip install -U pip setuptools wheel | |
pip install -r ./client/python/cryoet_data_portal/scripts/requirements-dev.txt | |
pip install -e ./client/python/cryoet_data_portal/ | |
- name: Test with pytest (API) | |
run: | | |
PYTHONPATH=. coverage run --parallel-mode -m pytest -v -rP --durations=20 ./client/python/cryoet_data_portal/tests/ | |
- uses: actions/upload-artifact@v3 | |
with: | |
name: coverage | |
path: ./.coverage* | |
retention-days: 3 | |
submit-codecoverage: | |
needs: | |
- unit_tests_python_client | |
runs-on: ubuntu-20.04 | |
steps: | |
- uses: actions/checkout@v2 | |
with: | |
fetch-depth: 0 | |
- uses: actions/download-artifact@v3 | |
with: | |
name: coverage | |
path: . | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: '3.10' | |
- name: install requirements | |
run: | | |
pip install coverage | |
- name: coverage report | |
run: | | |
coverage combine | |
coverage xml | |
- name: Upload coverage to Codecov | |
uses: codecov/codecov-action@v3 | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} | |
env_vars: OS,PYTHON | |
files: ./coverage.xml | |
flags: unittests | |
name: codecov-umbrella |