Update deployment config (#95) #102
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| name: Python cryoet_data_portal package unit tests | |
| on: | |
| pull_request: | |
| paths: | |
| - 'client/python/**' | |
| - '.github/workflows/**' # Re-run if a workflow is modified - useful to test workflow changes in PRs | |
| push: | |
| branches: [main] | |
| jobs: | |
| unit_tests_python_client: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: ['3.7', '3.8', '3.9', '3.10'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install -U pip setuptools wheel | |
| pip install -r ./client/python/cryoet_data_portal/scripts/requirements-dev.txt | |
| pip install -e ./client/python/cryoet_data_portal/ | |
| - name: Test with pytest (API) | |
| run: | | |
| PYTHONPATH=. coverage run --parallel-mode -m pytest -v -rP --durations=20 ./client/python/cryoet_data_portal/tests/ | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage | |
| path: ./.coverage* | |
| retention-days: 3 | |
| submit-codecoverage: | |
| needs: | |
| - unit_tests_python_client | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/download-artifact@v3 | |
| with: | |
| name: coverage | |
| path: . | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: install requirements | |
| run: | | |
| pip install coverage | |
| - name: coverage report | |
| run: | | |
| coverage combine | |
| coverage xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| env_vars: OS,PYTHON | |
| files: ./coverage.xml | |
| flags: unittests | |
| name: codecov-umbrella |