Fix build test #461
Workflow file for this run
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| name: tests | ||
| on: | ||
| push: | ||
| branches: | ||
| - "*" | ||
| pull_request: | ||
| branches: | ||
| - master | ||
| workflow_dispatch: | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
| concurrency: | ||
| group: "${{ github.ref }}-${{ github.head_ref }}" | ||
| cancel-in-progress: true | ||
| jobs: | ||
| build: | ||
| name: Build package and test build | ||
| uses: ./.github/workflows/_build-package.yml | ||
| with: | ||
| check-prerelease: ${{ env.IS_PRERELEASE }} | ||
|
Check failure on line 24 in .github/workflows/ci.yml
|
||
| cache-package: true | ||
| upload-package: true | ||
| test-files: true | ||
| test-imports: true | ||
| unit-tests: | ||
| name: ${{ matrix.label }} | ||
| runs-on: ${{ matrix.os }} | ||
| # only run once if internal PR | ||
| if: github.event_name == 'push' || github.event.pull_request.head.repo.full_name != github.repository | ||
| strategy: | ||
| matrix: | ||
| include: | ||
| - label: earliest | ||
| os: ubuntu-latest | ||
| python-version: 3.8 | ||
| rdkit-version: "rdkit=2021.03.1" | ||
| coverage: false | ||
| - label: baseline | ||
| os: ubuntu-latest | ||
| python-version: "3.10" | ||
| rdkit-version: "rdkit~=2022.09" | ||
| coverage: true | ||
| - label: latest | ||
| os: ubuntu-latest | ||
| python-version: "3.12" | ||
| rdkit-version: "rdkit" | ||
| coverage: false | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Setup Conda | ||
| uses: conda-incubator/setup-miniconda@v2 | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| auto-update-conda: true | ||
| channel-priority: flexible | ||
| channels: conda-forge, defaults | ||
| add-pip-as-python-dependency: true | ||
| architecture: x64 | ||
| use-mamba: true | ||
| miniforge-variant: Mambaforge | ||
| - name: Check conda and pip | ||
| run: | | ||
| which python | ||
| python --version | ||
| pip --version | ||
| conda --version | ||
| mamba --version | ||
| - name: Install conda dependencies | ||
| run: | | ||
| mamba install ${{ matrix.rdkit-version }} | ||
| mamba list | ||
| - name: Install package through pip | ||
| run: | | ||
| pip install .[dev] | ||
| pip list | ||
| - name: Run tests | ||
| run: | | ||
| pytest --color=yes --disable-pytest-warnings --cov=prolif --cov-report=xml tests/ | ||
| - name: Measure tests coverage | ||
| if: matrix.coverage | ||
| uses: codecov/codecov-action@v3 | ||
| with: | ||
| files: ./coverage.xml | ||
| fail_ci_if_error: true | ||
| verbose: true | ||
| token: ${{ secrets.CODECOV_TOKEN }} | ||
