Merge pull request #252 from clEsperanto/update-clic-0.13.3

Update to [email protected]
clEsperanto · Sep 29, 2024 · 90b0c1b · 90b0c1b
2 parents 335dcd5 + 52097f5
commit 90b0c1b
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Showing 10 changed files with 99 additions and 66 deletions.
diff --git a/pyclesperanto/_tier1.py b/pyclesperanto/_tier1.py
@@ -14,7 +14,7 @@
 
 clic = importlib.import_module('._pyclesperanto', package='pyclesperanto')
 
-@plugin_function(categories=["filter", "in assistant", "bia-bob-suggestion"])
+@plugin_function(categories=["filter", "in assistant"])
 def absolute(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -110,7 +110,7 @@ def add_image_and_scalar(
     """
     return clic._add_image_and_scalar(device, input_image, output_image, float(scalar))
 
-@plugin_function(categories=["combine", "binary processing", "in assistant", "combine labels", "label processing", "bia-bob-suggestion"])
+@plugin_function(categories=["combine", "binary processing", "in assistant", "combine labels", "label processing"])
 def binary_and(
     input_image0: Image,
     input_image1: Image,
@@ -200,7 +200,7 @@ def binary_not(
     """
     return clic._binary_not(device, input_image, output_image)
 
-@plugin_function(categories=["combine", "binary processing", "in assistant", "combine labels", "label processing", "bia-bob-suggestion"])
+@plugin_function(categories=["combine", "binary processing", "in assistant", "combine labels", "label processing"])
 def binary_or(
     input_image0: Image,
     input_image1: Image,
@@ -233,7 +233,7 @@ def binary_or(
     """
     return clic._binary_or(device, input_image0, input_image1, output_image)
 
-@plugin_function(categories=["combine", "binary processing", "in assistant", "combine labels", "label processing", "bia-bob-suggestion"])
+@plugin_function(categories=["combine", "binary processing", "in assistant", "combine labels", "label processing"])
 def binary_subtract(
     input_image0: Image,
     input_image1: Image,
@@ -263,7 +263,7 @@ def binary_subtract(
     """
     return clic._binary_subtract(device, input_image0, input_image1, output_image)
 
-@plugin_function(categories=["combine", "binary processing", "in assistant", "combine labels", "label processing", "bia-bob-suggestion"])
+@plugin_function(categories=["combine", "binary processing", "in assistant", "combine labels", "label processing"])
 def binary_xor(
     input_image0: Image,
     input_image1: Image,
@@ -665,7 +665,7 @@ def dilate_box(
     """
     return clic._dilate_box(device, input_image, output_image)
 
-@plugin_function(categories=["binary processing", "bia-bob-suggestion"])
+@plugin_function(categories=["binary processing"])
 def dilate_sphere(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -695,7 +695,7 @@ def dilate_sphere(
     """
     return clic._dilate_sphere(device, input_image, output_image)
 
-@plugin_function(categories=["binary processing", "bia-bob-suggestion"])
+@plugin_function(categories=["binary processing"])
 def dilate(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -880,7 +880,7 @@ def erode_box(
     """
     return clic._erode_box(device, input_image, output_image)
 
-@plugin_function(categories=["binary processing", "bia-bob-suggestion"])
+@plugin_function(categories=["binary processing"])
 def erode_sphere(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -910,7 +910,7 @@ def erode_sphere(
     """
     return clic._erode_sphere(device, input_image, output_image)
 
-@plugin_function(categories=["binary processing", "bia-bob-suggestion"])
+@plugin_function(categories=["binary processing"])
 def erode(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -1047,7 +1047,7 @@ def gaussian_blur(
     """
     return clic._gaussian_blur(device, input_image, output_image, float(sigma_x), float(sigma_y), float(sigma_z))
 
-@plugin_function(categories=["bia-bob-suggestion"])
+@plugin_function
 def generate_distance_matrix(
     input_image0: Image,
     input_image1: Image,
@@ -1333,7 +1333,7 @@ def hessian_eigenvalues(
     """
     return clic._hessian_eigenvalues(device, input_image, small_eigenvalue, middle_eigenvalue, large_eigenvalue)
 
-@plugin_function(categories=["filter", "edge detection", "in assistant", "bia-bob-suggestion"])
+@plugin_function(categories=["filter", "edge detection", "in assistant"])
 def laplace_box(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -1360,7 +1360,7 @@ def laplace_box(
     """
     return clic._laplace_box(device, input_image, output_image)
 
-@plugin_function(categories=["filter", "edge detection", "bia-bob-suggestion"])
+@plugin_function(categories=["filter", "edge detection"])
 def laplace_diamond(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -1387,7 +1387,7 @@ def laplace_diamond(
     """
     return clic._laplace_diamond(device, input_image, output_image)
 
-@plugin_function(categories=["filter", "edge detection", "bia-bob-suggestion"])
+@plugin_function(categories=["filter", "edge detection"])
 def laplace(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -1472,7 +1472,7 @@ def logarithm(
     """
     return clic._logarithm(device, input_image, output_image)
 
-@plugin_function(categories=["bia-bob-suggestion"])
+@plugin_function
 def mask(
     input_image: Image,
     mask: Image,
@@ -1505,7 +1505,7 @@ def mask(
     """
     return clic._mask(device, input_image, mask, output_image)
 
-@plugin_function(categories=["bia-bob-suggestion"])
+@plugin_function
 def mask_label(
     input_image0: Image,
     input_image1: Image,
@@ -1541,7 +1541,7 @@ def mask_label(
     """
     return clic._mask_label(device, input_image0, input_image1, output_image, float(label))
 
-@plugin_function(categories=["filter", "in assistant", "bia-bob-suggestion"])
+@plugin_function(categories=["filter", "in assistant"])
 def maximum_image_and_scalar(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -1572,7 +1572,7 @@ def maximum_image_and_scalar(
     """
     return clic._maximum_image_and_scalar(device, input_image, output_image, float(scalar))
 
-@plugin_function(categories=["combine", "in assistant", "bia-bob-suggestion"])
+@plugin_function(categories=["combine", "in assistant"])
 def maximum_images(
     input_image0: Image,
     input_image1: Image,
@@ -1837,7 +1837,7 @@ def mean_sphere(
     """
     return clic._mean_sphere(device, input_image, output_image, int(radius_x), int(radius_y), int(radius_z))
 
-@plugin_function(categories=["filter", "denoise", "in assistant", "bia-bob-suggestion"])
+@plugin_function(categories=["filter", "denoise", "in assistant"])
 def mean(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -2370,7 +2370,7 @@ def mode_sphere(
     """
     return clic._mode_sphere(device, input_image, output_image, int(radius_x), int(radius_y), int(radius_z))
 
-@plugin_function(categories=["label processing", "in assistant", "bia-bob-suggestion"])
+@plugin_function(categories=["label processing", "in assistant"])
 def mode(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -2410,7 +2410,7 @@ def mode(
     """
     return clic._mode(device, input_image, output_image, int(radius_x), int(radius_y), int(radius_z), str(connectivity))
 
-@plugin_function(categories=["combine", "bia-bob-suggestion"])
+@plugin_function(categories=["combine"])
 def modulo_images(
     input_image0: Image,
     input_image1: Image,
@@ -3083,7 +3083,7 @@ def range(
     """
     return clic._range(device, input_image, output_image, start_x, stop_x, step_x, start_y, stop_y, step_y, start_z, stop_z, step_z)
 
-@plugin_function(categories=["bia-bob-suggestion"])
+@plugin_function
 def read_values_from_positions(
     input_image: Image,
     list: Image,
@@ -3209,7 +3209,7 @@ def replace_intensity(
     """
     return clic._replace_intensity(device, input_image, output_image, float(scalar0), float(scalar1))
 
-@plugin_function(categories=["bia-bob-suggestion"])
+@plugin_function
 def replace_intensities(
     input_image0: Image,
     input_image1: Image,
@@ -4218,7 +4218,7 @@ def variance_box(
     """
     return clic._variance_box(device, input_image, output_image, int(radius_x), int(radius_y), int(radius_z))
 
-@plugin_function(categories=["filter", "edge detection", "in assistant", "bia-bob-suggestion"])
+@plugin_function(categories=["filter", "edge detection", "in assistant"])
 def variance_sphere(
     input_image: Image,
     output_image: Optional[Image] =None,

diff --git a/pyclesperanto/_tier2.py b/pyclesperanto/_tier2.py
@@ -14,7 +14,7 @@
 
 clic = importlib.import_module('._pyclesperanto', package='pyclesperanto')
 
-@plugin_function(categories=["combine", "in assistant", "bia-bob-suggestion"])
+@plugin_function(categories=["combine", "in assistant"])
 def absolute_difference(
     input_image0: Image,
     input_image1: Image,
@@ -112,7 +112,7 @@ def bottom_hat_box(
     """
     return clic._bottom_hat_box(device, input_image, output_image, int(radius_x), int(radius_y), int(radius_z))
 
-@plugin_function(categories=["filter", "background removal", "in assistant", "bia-bob-suggestion"])
+@plugin_function(categories=["filter", "background removal", "in assistant"])
 def bottom_hat_sphere(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -148,7 +148,7 @@ def bottom_hat_sphere(
     """
     return clic._bottom_hat_sphere(device, input_image, output_image, float(radius_x), float(radius_y), float(radius_z))
 
-@plugin_function(categories=["filter", "background removal", "in assistant", "bia-bob-suggestion"])
+@plugin_function(categories=["filter", "background removal", "in assistant"])
 def bottom_hat(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -288,7 +288,7 @@ def closing_sphere(
     """
     return clic._closing_sphere(device, input_image, output_image, int(radius_x), int(radius_y), int(radius_z))
 
-@plugin_function(categories=["filter", "in assistant", "bia-bob-suggestion"])
+@plugin_function(categories=["filter", "in assistant"])
 def closing(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -414,7 +414,7 @@ def concatenate_along_z(
     """
     return clic._concatenate_along_z(device, input_image0, input_image1, output_image)
 
-@plugin_function(categories=["bia-bob-suggestion"])
+@plugin_function
 def count_touching_neighbors(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -474,7 +474,7 @@ def crop_border(
     """
     return clic._crop_border(device, input_image, output_image, int(border_size))
 
-@plugin_function(categories=["filter", "background removal", "in assistant", "bia-bob-suggestion"])
+@plugin_function(categories=["filter", "background removal", "in assistant"])
 def divide_by_gaussian_background(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -741,7 +741,7 @@ def difference_of_gaussian(
     """
     return clic._difference_of_gaussian(device, input_image, output_image, float(sigma1_x), float(sigma1_y), float(sigma1_z), float(sigma2_x), float(sigma2_y), float(sigma2_z))
 
-@plugin_function(categories=["label processing", "in assistant", "bia-bob-suggestion"])
+@plugin_function(categories=["label processing", "in assistant"])
 def extend_labeling_via_voronoi(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -798,7 +798,7 @@ def invert(
     """
     return clic._invert(device, input_image, output_image)
 
-@plugin_function(categories=["label", "in assistant", "bia-bob-suggestion"])
+@plugin_function(categories=["label", "in assistant"])
 def label_spots(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -961,7 +961,7 @@ def opening_box(
     """
     return clic._opening_box(device, input_image, output_image, int(radius_x), int(radius_y), int(radius_z))
 
-@plugin_function(categories=["filter", "in assistant", "bia-bob-suggestion"])
+@plugin_function(categories=["filter", "in assistant"])
 def opening_sphere(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -994,7 +994,7 @@ def opening_sphere(
     """
     return clic._opening_sphere(device, input_image, output_image, float(radius_x), float(radius_y), float(radius_z))
 
-@plugin_function(categories=["filter", "in assistant", "bia-bob-suggestion"])
+@plugin_function(categories=["filter", "in assistant"])
 def opening(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -1132,7 +1132,7 @@ def square(
     """
     return clic._square(device, input_image, output_image)
 
-@plugin_function(categories=["combine", "in assistant", "bia-bob-suggestion"])
+@plugin_function(categories=["combine", "in assistant"])
 def squared_difference(
     input_image0: Image,
     input_image1: Image,
@@ -1200,7 +1200,7 @@ def standard_deviation_box(
     """
     return clic._standard_deviation_box(device, input_image, output_image, int(radius_x), int(radius_y), int(radius_z))
 
-@plugin_function(categories=["filter", "edge detection", "in assistant", "bia-bob-suggestion"])
+@plugin_function(categories=["filter", "edge detection", "in assistant"])
 def standard_deviation_sphere(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -1238,7 +1238,7 @@ def standard_deviation_sphere(
     """
     return clic._standard_deviation_sphere(device, input_image, output_image, int(radius_x), int(radius_y), int(radius_z))
 
-@plugin_function(categories=["filter", "edge detection", "in assistant", "bia-bob-suggestion"])
+@plugin_function(categories=["filter", "edge detection", "in assistant"])
 def standard_deviation(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -1512,7 +1512,7 @@ def top_hat_sphere(
     """
     return clic._top_hat_sphere(device, input_image, output_image, float(radius_x), float(radius_y), float(radius_z))
 
-@plugin_function(categories=["filter", "background removal", "in assistant", "bia-bob-suggestion"])
+@plugin_function(categories=["filter", "background removal", "in assistant"])
 def top_hat(
     input_image: Image,
     output_image: Optional[Image] =None,

diff --git a/pyclesperanto/_tier3.py b/pyclesperanto/_tier3.py
@@ -170,7 +170,7 @@ def remove_labels_on_edges(
     """
     return clic._remove_labels_on_edges(device, input_image, output_image, exclude_x, exclude_y, exclude_z)
 
-@plugin_function(categories=["label processing", "in assistant", "bia-bob-suggestion"])
+@plugin_function(categories=["label processing", "in assistant"])
 def exclude_labels_on_edges(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -298,7 +298,7 @@ def generate_binary_overlap_matrix(
     """
     return clic._generate_binary_overlap_matrix(device, input_image0, input_image1, output_image)
 
-@plugin_function(categories=["bia-bob-suggestion"])
+@plugin_function
 def generate_touch_matrix(
     input_image: Image,
     output_image: Optional[Image] =None,
@@ -411,7 +411,7 @@ def jaccard_index(
     """
     return clic._jaccard_index(device, input_image0, input_image1)
 
-@plugin_function(categories=["bia-bob-suggestion"])
+@plugin_function
 def labelled_spots_to_pointlist(
     input_image: Image,
     output_image: Optional[Image] =None,