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Add preloaded geneset with immunotherapy response-related signatures #162

Merged
merged 9 commits into from
Sep 9, 2024
15 changes: 15 additions & 0 deletions data-raw/Immunotherapy/immunotherapy.gmt
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LIU_TRASTUZUMAB_RESPONSE_UP doi:10.1073/pnas.1201105109 CCNA2 AURKB CLDN8 CHAF1B CCNB1 ATP7B NPY SCRN1
LIU_TRASTUZUMAB_RESPONSE_DOWN doi:10.1073/pnas.1201105109 CD74 C1QB ST8SIA4 VCAM1 CCR2 CD180 ITGB2 CD72 NRP1
DIAZ-GIL_TRASTUZUMAB:LAPATINIB_RESPONSE_UP doi:10.1186/s13046-021-02098-z PIP S100A14 BCL11A
DIAZ-GIL_TRASTUZUMAB:LAPATINIB_RESPONSE_DOWN doi:10.1186/s13046-021-02098-z MME CDH3 SCGB2A2 GSTM3 H19
WP_CANCER_IMMUNOTHERAPY_BY_PD1_BLOCKADE_UP https://www.gsea-msigdb.org/gsea/msigdb/human/geneset/WP_CANCER_IMMUNOTHERAPY_BY_PD1_BLOCKADE BATF CD274 CD3D CD3E CD3G CD8A CD8B HLA-A HLA-DRB1 IFNG JUN LCK NFAT5 NFATC1 NFATC2 NFATC3 NFATC4 NFKB1 PDCD1 PDCD1LG2 PTPN11 STAT3 ZAP70
WP_CANCER_IMMUNOTHERAPY_BY_CTLA4_BLOCKADE_UP https://www.gsea-msigdb.org/gsea/msigdb/human/geneset/WP_CANCER_IMMUNOTHERAPY_BY_CTLA4_BLOCKADE CD28 CD80 CD86 CTLA4 HLA-DRB1 PIK3CA PIK3CB PIK3CD PIK3R1 PIK3R2 PIK3R3 PPP2CA PTPN11 PTPN6
ENSENYAT-MENDEZ_TNBC_ICI_RESPONSE_UP doi:10.1038/s43856-023-00311-y NLRC5 GZMB CD8A C6orf89 RPA1 RBBP8 RABEP1 BATF2 FGD3 CXCL13 MED9 BLTP2 PTPN2 KLHDC7B ZNG1E CXCL9 GBP4 RTN3 GBP1 TRIM37
ENSENYAT-MENDEZ_TNBC_ICI_RESPONSE_DOWN doi:10.1038/s43856-023-00311-y SALL1 GALNT5 CDH6 GUCY1A2 ADAMTS12 TMEM92 ITGB3 PHLDB1 RPA4 MGLL IGDCC4 COL5A3 LDB2 SCN4B PRSS1 SPMAP2 ITGA2
ALTORKI_LUNG_ANTI-PD-L1_RESPONSE_UP doi:10.1016/j.xcrm.2024.101438 GJB3 UBE2C TICRR CEP55 FOXM1 TOP2A TPX2 KIF18B MELK CDC20 KIF4A DEPDC1 ZNF695 BIRC5 RRM2 TYMS CDK1 CDCA5 MKI67 CDCA2 TTK CDCA3 AURKB DLGAP5 KIF20A CENPF MYBL2 KIF2C CCNB2 NEK2 HJURP CDC45 CENPA KIF11 ANLN PKMYT1 CDC25A KIF23 ASPM DEPDC1B NCAPH NCAPG CDKN3 RAD54L CKAP2L CCNB1 HMMR DTL MCM10 CKS2 CDT1 UBE2S KIFC1 RAD51 MAD2L1 GINS2 BUB1B CDCA8 BUB1 GTSE1 IQGAP3 ASF1B CENPE ECT2 NDC80 CLSPN CDC6 PRR11 ZWINT SHCBP1 PLK1 CCNA2 PTTG1 ORC1 E2F1 UHRF1 BRCA1 MCM4 DIAPH3 ARHGAP11A NUSAP1 CENPN CENPI MCM2 SPAG5 CHEK1 EZH2 RACGAP1 UBE2T STIL FEN1 DSCC1 KIF15 KNSTRN NCAPD2 PGAM5 MRPL12 RANBP1 INCENP PA2G4 MCM6 MASTL ALYREF PPM1G CDK2 CENPO PRPF19 PSMD3 ACLY CFAP20DC H2AC4 H2AC11 H2AC12 H2AC13 H2AC14 H2AC16 H2AC18 H2AC19 H2AZ1 H2BC5 H2BC11 H2BC13 H2BC17 H3C2 H3C3 H3C14 H3C15 H4C8 H4C14 H4C15 HASPIN HROB PCLAF PIMREG TEDC2
ALTORKI_LUNG_ANTI-PD-L1_RESPONSE_DOWN doi:10.1016/j.xcrm.2024.101438 PDXDC2P CRY2 ACAD8 FMO5 TDRD10
WANG_MELANOMA_HOT_VS_COLD_UP doi:10.1126/sciadv.abd7851 CD274 CD8A CD8B CD3E CXCR3 PDCD1 CCL5 CXCL9 CXCL10 CXCL11 CD4 CXCR4
WANG_MELANOMA_HOT_VS_COLD_DOWN doi:10.1126/sciadv.abd7851 CXCL1 CXCL2 CCL20
AYERS_MELANOMA_ANTI-PD-L1_RESPONSE_UP doi:10.1172/JCI91190 IFNG STAT1 CXCL9 CXCL10 IDO1 HLA-DRA
AYERS_TIS_UP doi:10.1172/JCI91190 CCL5 CD27 CD274 CD276 CD8A CMKLR1 CXCL9 CXCR6 HLA-DQA1 HLA-DRB1 HLA-E IDO1 LAG3 NKG7 PDCD1LG2 PSMB10 STAT1 TIGIT
CABRITA_TLS_UP doi:10.1038/s41586-019-1914-8 CD79B CD1D CCR6 LAT SKAP1 CETP EIF1AY RBP5 PTGDS
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