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Extend automatic segmentation CLI to continue annotation #729

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anwai98 opened this issue Oct 9, 2024 · 1 comment · Fixed by #858
Open

Extend automatic segmentation CLI to continue annotation #729

anwai98 opened this issue Oct 9, 2024 · 1 comment · Fixed by #858
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enhancement New feature or request

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@anwai98
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anwai98 commented Oct 9, 2024

I came across a random thought: would it be interesting to integrate annotators to automatic segmentation CLI?

This would go in the direction of an intuitive segmentation workflow, where: user utilizes the CLI to perform automatic segmentation, and can move ahead with parsing an argument stating --annotator, which will activate the napari GUI, load the automatic segmentation to the committed_objects and a user then has the choice of improving segmentation using interactive mode.

PS. I also feel it might be an overkill, it's just a thought though (only makes sense if it's beneficial for a use-case).

cc: @constantinpape

@constantinpape
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I think that's a nice idea, and not much overhead. Before this we should make sure the segmentation_result argument works correctly in all annotators, as this would be how to implement this.

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