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conorjudge · Jan 31, 2020 · 91c6cf6 · 91c6cf6
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diff --git a/NEWS → NEWS.md b/NEWS → NEWS.md
diff --git a/R/multivariable_mr.R b/R/multivariable_mr.R
@@ -27,6 +27,7 @@ mv_extract_exposures <- function(id_exposure, clump_r2=0.001, clump_kb=10000, ha
 
 	# Get effects of each instrument from each exposure
 	d1 <- extract_outcome_data(exposure_dat$SNP, id_exposure, access_token = access_token, proxies=find_proxies)
+	print(str(d1))
 	d1 <- subset(d1, mr_keep.outcome)
 	d2 <- subset(d1, id.outcome != id_exposure[1])
 	d1 <- convert_outcome_to_exposure(subset(d1, id.outcome == id_exposure[1]))

diff --git a/_pkgdown.yml b/_pkgdown.yml
@@ -1,16 +1,23 @@
+template:
+  params:
+    bootswatch: united
+
 navbar:
   left:
-    - text: "Vignettes"
+    - text: "Guide"
       href: articles/index.html
     - text: "Functions"
       href: reference/index.html
+    - text: "Changelog"
+      href: "news/index.html"
+  right:
     - text: "Source"
       href: https://github.com/mrcieu/TwoSampleMR
 
 articles:
-  - title: "Vignettes"
+  - title: "Guide"
     desc: >
-      The following vignettes provide detailed illustrations of the
+      The following pages provide detailed illustrations of the
       TwoSampleMR package.
     contents:
     - introduction

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html
diff --git a/docs/LICENSE.html b/docs/LICENSE.html
diff --git a/docs/articles/exposure.html b/docs/articles/exposure.html
diff --git a/docs/articles/gwas2020.html b/docs/articles/gwas2020.html
diff --git a/docs/articles/harmonise.html b/docs/articles/harmonise.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/articles/introduction.html b/docs/articles/introduction.html