hedgehog #118

	name: hedgehog
	on: [push, pull_request]
	defaults:
	run:
	shell: bash -l {0}
	jobs:
	run_hedgehog_test:
	name: Hedgehog test on ${{ matrix.os }}
	runs-on: ${{ matrix.os }}
	strategy:
	matrix:
	os: ["ubuntu-latest"]
	steps:
	- uses: actions/checkout@v2
	- uses: conda-incubator/setup-miniconda@v2
	with:
	environment-file: environment.yml
	activate-environment: hedgehog
	channels: conda-forge,bioconda,defaults
	python-version: "3.10"
	conda-version: "23.5.0"
	mamba-version: "*"
	- name: Install hedgehog
	run: pip install -e .
	- name: Check hedgehog version
	run: hedgehog --version
	- name: Run hedgehog with test data
	run: hedgehog hedgehog/tests/test.fasta 2>&1 \| tee hedgehog.log

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