Fix `crystal tool dependencies` format flat #3768

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Job	Run time
LLVM 13.0.0	27m 56s
LLVM 14.0.0	35m 26s
LLVM 15.0.6	29m 12s
LLVM 16.0.3	28m 37s
LLVM 17.0.6	28m 35s
LLVM 18.1.4	27m 19s
	2h 57m 5s