format clean

cumc · Oct 26, 2024 · 716948c · 716948c
1 parent 2145fdc
commit 716948c
Showing 1 changed file with 0 additions and 6 deletions.
diff --git a/code/pecotmr_integration/twas.ipynb b/code/pecotmr_integration/twas.ipynb
@@ -393,8 +393,6 @@
     "        file_regions_df['chr'] = file_regions_df['chr'].str.strip()\n",
     "        check_required_columns(file_regions_df, required_ld_columns)\n",
     "        regions_df = pd.concat([regions_df, file_regions_df])\n",
-    "        print('regions_df')\n",
-    "        print(regions_df)\n",
     "    # Process region_name if provided: \n",
     "    # fomat: region_name = [\"chr1_16103_2888443\", \"chr1_4320284_5853833\"]\n",
     "    if len(region_name) > 0:\n",
@@ -403,12 +401,8 @@
     "        extra_regions_df = pd.DataFrame(extra_regions, columns=['chr', 'start', 'stop'])\n",
     "        extra_regions_df['start'] = extra_regions_df['start'].astype(int)\n",
     "        extra_regions_df['stop'] = extra_regions_df['stop'].astype(int)\n",
-    "        print('extra_regions_df')\n",
-    "        print(extra_regions_df)\n",
     "        # Add extra regions to regions_df\n",
     "        regions_df = pd.concat([regions_df, extra_regions_df])\n",
-    "        print('final regions_df')\n",
-    "        print(regions_df)\n",
     "    # Remove duplicates and reset index\n",
     "    regions_df = regions_df.drop_duplicates().reset_index(drop=True)\n",
     "    regions_dict = OrderedDict()\n",