mspipelines 0.3.1

Breaking changes

• msdial/msdial_gcms: Now only accepts one or more input files. Directories are
  no longer accepted.

Breaking changes

• msdial/msdial_lcms: Added MSDial LC/MS DDA/DIA component.

Major changes

• msdial/msdial_gcms: Added support for setting the name, type, class_id, batch, analytical_order and inject_volume of input files.

Minor changes

• convert/thermo_to_mzml: Revert being able to process input directories. Only allow
  processing individual input files.

Bug fixes

• maxquant/maxquant: Fix refactoring error in script.