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Bugfix shift distance #163

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@ahillsley ahillsley commented Sep 27, 2024

-I merged main into this branch so the majority of the changes are from that

  • The bug fix is 2 lines in analysis.stitch. I adjusted the estimated shift by the ROI used in the phase crosscorrelation before being applied to the raw position of the tile

tayllatheodoro and others added 3 commits September 19, 2024 13:50
* updating code for pydantic v2

* update for iohub in stable version

* update TransformationMeta import from iohub.ngff_meta to iohub.ngff

* update channel_display_settings import from iohub.display_utils to iohub.ngff

* update channel_display_settings import from iohub.ngff to iohub.ngff.disply and sorting imports for style correction

* imports organization for style test

* imports organization for style test

* imports organization for style test

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Co-authored-by: Taylla Milena Theodoro <[email protected]>
…lating the raw position from the calculated shift
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