updated reprocessing of the files

databio · Jan 7, 2025 · db77732 · db77732
1 parent 7414e1e
commit db77732
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Showing 2 changed files with 11 additions and 2 deletions.
diff --git a/bedboss/bbuploader/main.py b/bedboss/bbuploader/main.py
@@ -500,6 +500,15 @@ def _upload_gse(
             )
             sa_session.add(sample_status)
             sa_session.commit()
+        else:
+            if sample_status.status == STATUS.SUCCESS and not overwrite:
+                _LOGGER.info(
+                    f"Skipping: '{required_metadata.sample_name}' - already processed"
+                )
+                uploaded_files.append(sample_status.genome)
+                project_status.number_of_processed += 1
+                continue
+
 
         sample_status.genome = required_metadata.ref_genome
         # to upload files only with a specific genome

diff --git a/bedboss/utils.py b/bedboss/utils.py
@@ -209,8 +209,8 @@ def calculate_time(func):
     @wraps(func)
     def wrapper(*args, **kwargs):
 
-        print(f"--> Arguments: {args}")
-        print(f"--> Keyword arguments: {kwargs}")
+        # print(f"--> Arguments: {args}")
+        # print(f"--> Keyword arguments: {kwargs}")
 
         start_time = time.time()
         result = func(*args, **kwargs)