Code

Convert to nwb#44

Code

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kabilar merged 88 commits intodatajoint:maindatajoint/element-array-ephys:mainfrom bendichter:convert_to_nwbbendichter/element-array-ephys:convert_to_nwbCopy head branch name to clipboardMay 9, 2022

+695-1

Commits

Commits on Nov 10, 2021

• Mult rootdirs. If sess_dir, check fullpath. Give OpenEphys fullpath.

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Commits on Dec 15, 2021

• add draft convert to nwb

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Commits on Jan 5, 2022

• * add lfp from source

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Commits on Jan 12, 2022

• Update element_array_ephys/export/nwb.py

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• Update element_array_ephys/export/nwb.py

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• Update element_array_ephys/export/nwb.py

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Commits on Jan 14, 2022

• add documentation

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• * optimize imports

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• Merge remote-tracking branch 'origin/convert_to_nwb' into convert_to_nwb

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Commits on Jan 25, 2022

• add missing nwbfile arg

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• add some docstrings

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• add readme for exporting to NWB

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Commits on Jan 30, 2022

• refactor to include requirements for nwb conversion

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• relative import of ephys

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• add datetime import

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• add optional session keys to ecephys_session_to_nwb

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• fix nwbfile_kwargs logic

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• fix nwbfile_kwargs logic

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• import from workflow pipeline

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• import from workflow pipeline

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• import session_to_nwb

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• import probe

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• ephys.get_ephys_root_data_dir

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• standardize slashes

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• import os

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• ephys.find_full_path

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Commits on Feb 4, 2022

• correctly set conversion and channel_conversion

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• refactor into gains_helper

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• add tests

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Commits on Feb 8, 2022

• Merge branch 'main' into convert_to_nwb

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• Update element_array_ephys/export/nwb/nwb.py

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Commits on Feb 9, 2022

• update import path

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• Merge remote-tracking branch 'origin/convert_to_nwb' into convert_to_nwb

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Commits on Feb 10, 2022

• Rebase, squashed. See Details

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Commits on Feb 11, 2022

• Avoid linking_module issues. See details.

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Commits on Feb 15, 2022

• nwb function specification in linking_module

  

  Thinh Nguyen

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• Merge pull request #1 from ttngu207/chris-nwb

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Commits on Feb 16, 2022

• import the correct ephys module that has been activated

  

  Thinh Nguyen

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• Merge pull request CBroz1#2 from ttngu207/chris-nwb

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• adjust imports in __init__ and nwb.py

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Commits on Feb 22, 2022

• add tests for getting lfp data from datajoint

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Commits on Feb 28, 2022

• import GenericDataChunkIterator from hdmf

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• rmv subject_id

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• Merge remote-tracking branch 'cbroz1/ben' into convert_to_nwb

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Commits on Mar 1, 2022

• rmv tests (they are moved to the ephys workflow)

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Commits on Mar 4, 2022

• fix imports

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Commits on Mar 21, 2022

• Update element_array_ephys/export/nwb/nwb.py

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• Update element_array_ephys/ephys_acute.py

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• Update element_array_ephys/export/nwb/nwb.py

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• Update element_array_ephys/export/nwb/nwb.py

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• Update element_array_ephys/export/nwb/README.md

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• Update element_array_ephys/export/nwb/nwb.py

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• Update element_array_ephys/export/nwb/README.md

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• Update element_array_ephys/export/nwb/nwb.py

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• Update element_array_ephys/export/nwb/README.md

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• add docstring for gain_helper

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• Update element_array_ephys/export/nwb/nwb.py

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• Update element_array_ephys/export/nwb/nwb.py

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• specify releases for dependencies

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• Merge remote-tracking branch 'origin/convert_to_nwb' into convert_to_nwb

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• Merge branch 'main' into convert_to_nwb

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• Update element_array_ephys/export/nwb/nwb.py

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• Update element_array_ephys/export/nwb/nwb.py

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• Update element_array_ephys/export/nwb/nwb.py

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• fix docstring for get_electrodes_mapping

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• Merge remote-tracking branch 'origin/convert_to_nwb' into convert_to_nwb

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• Update element_array_ephys/export/nwb/nwb.py

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Commits on Mar 22, 2022

• Update element_array_ephys/export/nwb/nwb.py

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• Update element_array_ephys/export/nwb/nwb.py

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• Update element_array_ephys/export/nwb/nwb.py

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• Update element_array_ephys/export/nwb/nwb.py

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• Update element_array_ephys/export/nwb/nwb.py

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• Update element_array_ephys/export/nwb/nwb.py

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• add explanation in docstring of add_ephys_units_to_nwb

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• Merge remote-tracking branch 'origin/convert_to_nwb' into convert_to_nwb

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• add explanation for index parameter

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• fix insertion record

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• rmv units_query

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• trying clustering_query..proj()

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• Update element_array_ephys/export/nwb/nwb.py

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• Update element_array_ephys/export/nwb/nwb.py

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Commits on Apr 18, 2022

• Update element_array_ephys/export/nwb/nwb.py

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• Update element_array_ephys/export/nwb/nwb.py

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• Update element_array_ephys/export/nwb/nwb.py

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Commits on Apr 27, 2022

• remove ephys_no_curation.py

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• Merge remote-tracking branch 'origin/convert_to_nwb' into convert_to_nwb

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• Update element_array_ephys/export/nwb/nwb.py

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• Update element_array_ephys/export/nwb/nwb.py

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