Web interface to generate parameters config file for imputation workflow.
| Program | Version |
|---|---|
| conform-gt | 24May16 |
| Beagle 5.2 | 21Apr21.304 |
| bcftools | 1.9 |
More workflow detail is https://sc.ddbj.nig.ac.jp/advanced_guides/imputation_server
Web site image is here
The web user interface enables the users to specify these parameters graphically.
There are 2 mandatory input parameters.
- Target genotype dataset (VCF Format)
- Reference panel dataset (Dataset containing phased haplotypes)
There are 2 optional input parameters.
- Number of threads (default value of 16)
- The posterior probability of possible genotypes is included in the output file (default is false)
- Generated config file
- This is used as input parameters for imputation workflow
We obtained the HIBAG model files from https://hibag.s3.amazonaws.com/hlares_index.html on January 5, 2024.
