improve teh way they are called #16
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| name: Integration Tests | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| env: | |
| MODELS: "polite-pig, placid-llama, chatty-frog, hiding-tiger, laid-back-lobster" | |
| jobs: | |
| integration-tests: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - name: ubuntu | |
| os: ubuntu-latest | |
| url_file_name: fiji-linux64.zip | |
| fiji_executable: ImageJ-linux64 | |
| - name: windows | |
| os: windows-latest | |
| url_file_name: fiji-win64.zip | |
| fiji_executable: ImageJ-win64.exe | |
| - name: macos-arm64 | |
| os: macos-14 | |
| url_file_name: fiji-macosx.zip | |
| fiji_executable: ImageJ-macosx | |
| - name: macos-x86_64 | |
| os: macos-13 | |
| url_file_name: fiji-macosx.zip | |
| fiji_executable: ImageJ-macosx | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up JDK 8 | |
| uses: actions/setup-java@v4 | |
| with: | |
| java-version: '8' | |
| distribution: 'zulu' | |
| - name: Cache Maven repository | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.m2 | |
| key: ${{ runner.os }}-m2-${{ hashFiles('**/pom.xml') }} | |
| restore-keys: | | |
| ${{ runner.os }}-m2- | |
| - name: Cache Fiji | |
| id: cache-fiji | |
| uses: actions/cache@v4 | |
| with: | |
| path: ./fiji | |
| key: ${{ runner.os }}-fiji | |
| - name: Set up Fiji | |
| if: steps.cache-fiji.outputs.cache-hit != 'true' | |
| run: | | |
| mkdir -p fiji | |
| wget -q https://downloads.imagej.net/fiji/latest/${{ matrix.url_file_name }} -O fiji.zip | |
| unzip fiji.zip -d fiji | |
| - name: Build Plugin | |
| run: mvn clean package | |
| - name: Get plugin name and version | |
| run: | | |
| MVN_VERSION=$(mvn -q \ | |
| -Dexec.executable=echo \ | |
| -Dexec.args='${project.version}' \ | |
| --non-recursive \ | |
| exec:exec) | |
| MVN_NAME=$(mvn -q \ | |
| -Dexec.executable=echo \ | |
| -Dexec.args='${project.name}' \ | |
| --non-recursive \ | |
| exec:exec) | |
| echo "version=${MVN_VERSION}" >> $GITHUB_OUTPUT | |
| echo "name=${MVN_NAME}" >> $GITHUB_OUTPUT | |
| id: mvn_info | |
| - name: Copy Plugin to Fiji | |
| run: cp target/${{steps.mvn_info.outputs.name}}-${{steps.mvn_info.outputs.version}}.jar fiji/Fiji.app/plugins/ | |
| - name: Download dependencies | |
| run: | | |
| wget -q -P fiji/Fiji.app/jars/ https://maven.scijava.org/content/groups/public/io/bioimage/dl-modelrunner/0.5.10-SNAPSHOT/dl-modelrunner-0.5.10-20241111.153028-64.jar | |
| wget -q -P fiji/Fiji.app/jars/ https://repo1.maven.org/maven2/net/java/dev/jna/jna-platform/5.13.0/jna-platform-5.13.0.jar | |
| - name: Set up engine using Jython script and Fiji headless | |
| run: | | |
| fiji/Fiji.app/${{ matrix.fiji_executable }} --headless --console scripts/download_engines.py -engines_path fiji/Fiji.app/engines | |
| - name: Set up the wanted models to test and create macro | |
| run: | | |
| fiji/Fiji.app/${{ matrix.fiji_executable }} --headless --console .github/create_macro.py -model_nicknames -models_dir fiji/Fiji.app/models -macro_path macro.ijm | |
| - name: Run macros | |
| run: | | |
| fiji/Fiji.app/${{ matrix.fiji_executable }} --headless --console macro.ijm | |
| - name: Check that the expected result has been produced | |
| run: | | |
| # TODO check that the expected files have been created and that they have the expected size |