add double file separator for java

deepimagej · Nov 13, 2024 · f717046 · f717046
1 parent bb5836e
commit f717046
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diff --git a/.github/create_macro.py b/.github/create_macro.py
@@ -113,6 +113,7 @@ def parse_model_paths(models):
             macro = MACRO_STR.format(model_path="[" + mfp + "]", input_path="[" + os.path.join(mfp, sample_name) + "]", output_folder="[" + mfp + "]")
         else:
             macro = MACRO_STR.format(model_path=mfp, input_path=os.path.join(mfp, sample_name), output_folder=mfp)
+        macro = macro.replace(os.sep, os.sep + os.sep)
         file.write(macro + os.linesep)
         print(macro)
 

diff --git a/.github/workflows/integration_test.yaml b/.github/workflows/integration_test.yaml
@@ -97,6 +97,7 @@ jobs:
             -json_fpath ${{ env.JSON_FPATH }}
 
       - name: Run macros
+        shell: bash
         run: |
           fiji/Fiji.app/${{ matrix.fiji_executable }} --headless --console --debug -macro ${{ env.MACRO_FPATH }}