Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

KPNO install fix #60

Merged
merged 9 commits into from
Mar 22, 2024
Merged

KPNO install fix #60

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
9 commits
Select commit Hold shift + click to select a range
110e8f8
Do not install pip packages on desi-7.
dli-astro Mar 7, 2023
579f475
Don't install specex and QuasarNP at KPNO.
dli-astro Mar 7, 2023
aaec11c
Merge branch 'main' of https://github.com/desihub/desiconda into kpno…
dli-astro Mar 20, 2023
6432122
Settings specific to desi-7.
dli-astro Mar 20, 2023
f8f1123
Undo guards for desi-7 (offloaded to custom env).
dli-astro Mar 20, 2023
b184a4e
Merge branch 'main' into kpno-install-fix
marcelo-alvarez May 25, 2023
24cab6c
Use the libmamba package solver.
dli-astro Jul 26, 2023
48d923e
Fix to ensure libmamba solver is recognized.
dli-astro Jul 28, 2023
9625758
Option to install on desi-7 or desi-8.
dli-astro Jul 28, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
12 changes: 12 additions & 0 deletions conf/kpno-env.sh
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
# export MINICONDA=https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
# miniforge solves fast and works well with conda-forge
export MINICONDA=https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-$(uname)-$(uname -m).sh
export CONDAVERSION=2.0
export GRP=datasystems
export CONDAPRGENV=gnu

export CC="gcc"
export FC="gfortran"
export CFLAGS="-O3 -fPIC -pthread"
export FCFLAGS="-O3 -fPIC -pthread -fexceptions"
export NTMAKE=8
2 changes: 2 additions & 0 deletions conf/kpno-pkgs.sh
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,2 @@
source $CONFDIR/conda-pkgs.sh

6 changes: 6 additions & 0 deletions install.sh
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -54,6 +54,12 @@ source $CONDADIR/bin/activate
export PYVERSION=$(python -c "import sys; print(str(sys.version_info[0])+'.'+str(sys.version_info[1]))")
echo Using Python version $PYVERSION

# Prior to installing packages, switch to the fast libmamba package solver.
echo Installing the libmamba package solver
conda config --set solver classic
conda install -n base conda-libmamba-solver -y
conda config --set solver libmamba

# Install packages
source $INSTALLPKGS

Expand Down
6 changes: 5 additions & 1 deletion scripts/bootstrap-desi.sh
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,11 @@ pip install git+https://github.com/desihub/desiutil.git
if [[ "${NERSC_HOST}" == "datatran" ]]; then
pkgs="desiutil desitree desiBackup desidatamodel desitransfer desida"
else
pkgs="desiutil desitree desispec specter gpu_specter desimodel desitarget specsim desisim fiberassign desisurvey surveysim redrock redrock-templates prospect desimeter simqso speclite specex QuasarNP desisim-testdata desisurveyops"
if [ "${HOSTNAME}" == "desi-7" ] || [ "${HOSTNAME}" == "desi-8" ]; then
pkgs="desiutil desitree desispec specter gpu_specter desimodel desitarget specsim desisim fiberassign desisurvey surveysim redrock redrock-templates prospect desimeter simqso speclite nightwatch"
else
pkgs="desiutil desitree desispec specter gpu_specter desimodel desitarget specsim desisim fiberassign desisurvey surveysim redrock redrock-templates prospect desimeter simqso speclite specex QuasarNP desisim-testdata desisurveyops"
fi
fi
export DESI_SPX_MKL=true
base=$(realpath $DESICONDA/..)
Expand Down