Merge pull request #2526 from devitocodes/docker-compilers-update

docker: update compilers to more recent versions

.github/workflows/docker-devito.yml

@@ -20,26 +20,26 @@ jobs:
         include:
           - base: 'bases:nvidia-nvc'
             tag: 'nvidia-nvc'
-            flag: '--gpus all'
+            flag: '--init --gpus all'
             test: 'tests/test_gpu_openacc.py tests/test_gpu_common.py'
             runner: ["self-hosted", "nvidiagpu"]
 
           # Runtime gpu flags from https://hub.docker.com/r/rocm/tensorflow/
           - base: 'bases:amd'
             tag: 'amd'
-            flag: '--network=host --device=/dev/kfd --device=/dev/dri --ipc=host --group-add video --group-add $(getent group render | cut -d: -f3) --cap-add=SYS_PTRACE --security-opt seccomp=unconfined'
+            flag: '--init --network=host --device=/dev/kfd --device=/dev/dri --ipc=host --group-add video --group-add $(getent group render | cut -d: -f3) --cap-add=SYS_PTRACE --security-opt seccomp=unconfined'
             test: 'tests/test_gpu_openmp.py'
             runner: ["self-hosted", "amdgpu"]
 
           - base: 'bases:cpu-gcc'
             tag: "gcc"
-            flag: ''
+            flag: '--init -t'
             test: 'tests/test_operator.py'
             runner: ubuntu-latest
 
           - base: 'bases:cpu-icx'
             tag: "icx"
-            flag: ''
+            flag: '--init -t'
             test: 'tests/test_operator.py'
             runner: ubuntu-latest
 

.github/workflows/pytest-core-mpi.yml

@@ -87,9 +87,9 @@ jobs:
       
       - name: Test with pytest
         run: |
-          docker run --rm -t -e CODECOV_TOKEN=${{ secrets.CODECOV_TOKEN }} -e OMP_NUM_THREADS=1 --name testrun devito_img pytest tests/test_mpi.py
+          docker run --init -t --rm -e CODECOV_TOKEN=${{ secrets.CODECOV_TOKEN }} -e OMP_NUM_THREADS=1 --name testrun devito_img pytest tests/test_mpi.py
 
       - name: Test examples with MPI
         run: |
-          docker run --rm -t ${{ matrix.mpiflag }} -e DEVITO_MPI=1 -e OMP_NUM_THREADS=1 --name examplerun devito_img mpiexec -n 2 pytest examples/seismic/acoustic
-          docker run --rm -t -e DEVITO_MPI=1 -e OMP_NUM_THREADS=1 --name examplerun devito_img mpiexec -n 2 pytest examples/seismic/tti
+          docker run --init -t --rm ${{ matrix.mpiflag }} -e DEVITO_MPI=1 -e OMP_NUM_THREADS=1 --name examplerun devito_img mpiexec -n 2 pytest examples/seismic/acoustic
+          docker run --init -t --rm -e DEVITO_MPI=1 -e OMP_NUM_THREADS=1 --name examplerun devito_img mpiexec -n 2 pytest examples/seismic/tti

.github/workflows/pytest-core-nompi.yml

@@ -134,7 +134,7 @@ jobs:
     - name: Set run prefix
       run: |
           if [[ "${{ matrix.name }}" =~ "docker" ]]; then
-              echo "RUN_CMD=docker run --rm -t -e CODECOV_TOKEN=${{ secrets.CODECOV_TOKEN }} --name testrun devito_img"  >> $GITHUB_ENV
+              echo "RUN_CMD=docker run --init -t --rm -e CODECOV_TOKEN=${{ secrets.CODECOV_TOKEN }} --name testrun devito_img"  >> $GITHUB_ENV
           else
               echo "RUN_CMD=" >> $GITHUB_ENV
           fi

.github/workflows/pytest-gpu.yml

@@ -57,7 +57,7 @@ jobs:
           base: "devitocodes/bases:nvidia-nvc"
           tags: ["self-hosted", "nvidiagpu"]
           test_drive_cmd: "nvidia-smi"
-          flags: '--gpus all --rm -t --name testrun-nvc'
+          flags: '--init --gpus all --rm -t --name testrun-nvc'
 
         - name: pytest-gpu-omp-amd
           test_files: "tests/test_adjoint.py tests/test_gpu_common.py tests/test_gpu_openmp.py"
@@ -66,7 +66,7 @@ jobs:
           test_drive_cmd: "rocm-smi"
           # Attach the AMD GPU devices `/dev` and add user to video and render (109 on wampa) group
           # Options from https://rocmdocs.amd.com/en/latest/ROCm_Virtualization_Containers/ROCm-Virtualization-&-Containers.html
-          flags: "--network=host --device=/dev/kfd --device=/dev/dri --ipc=host --group-add video --group-add $(getent group render | cut -d: -f3) --cap-add=SYS_PTRACE --security-opt seccomp=unconfined --rm -t --name testrun-amd"
+          flags: "--init --network=host --device=/dev/kfd --device=/dev/dri --ipc=host --group-add video --group-add $(getent group render | cut -d: -f3) --cap-add=SYS_PTRACE --security-opt seccomp=unconfined --rm -t --name testrun-amd"
 
     steps:
     - name: Checkout devito

.github/workflows/tutorials.yml

@@ -75,7 +75,7 @@ jobs:
     - name: Set run prefix
       run: |
           if [ "${{ matrix.name }}" == 'tutos-docker-gcc-py39' ]; then
-              echo "RUN_CMD=docker run --rm -t --name testrun devito_img" >> $GITHUB_ENV
+              echo "RUN_CMD=docker run --init -t --rm --name testrun devito_img" >> $GITHUB_ENV
           else
               echo "RUN_CMD=" >> $GITHUB_ENV
           fi

devito/arch/archinfo.py

@@ -270,7 +270,7 @@ def cbk(deviceid=0):
         for line in lines:
             if 'GPU' in line:
                 # Product
-                pattern = r'GPU\[(\d+)\].*?Card series:\s*(.*?)\s*$'
+                pattern = r'GPU\[(\d+)\].*?Card [sS]eries:\s*(.*?)\s*$'
                 match1 = re.match(pattern, line)
 
                 if match1:
@@ -280,7 +280,7 @@ def cbk(deviceid=0):
                     gpu_infos[gid]['product'] = match1.group(2)
 
                 # Model
-                pattern = r'GPU\[(\d+)\].*?Card model:\s*(.*?)\s*$'
+                pattern = r'GPU\[(\d+)\].*?Card [mM]odel:\s*(.*?)\s*$'
                 match2 = re.match(pattern, line)
 
                 if match2:

docker/Dockerfile.amd

@@ -3,12 +3,12 @@
 # Based on  https://github.com/amd/InfinityHub-CI/tree/main/base-gpu-mpi-rocm-docker
 ##############################################################
 
-ARG ROCM_VERSION=5.5.1
+ARG ROCM_VERSION=6.3.2
 
 FROM rocm/dev-ubuntu-22.04:${ROCM_VERSION}-complete as sdk-base
 
-ARG UCX_BRANCH="v1.13.1"
-ARG OMPI_BRANCH="v4.1.4"
+ARG UCX_BRANCH="v1.14.1"
+ARG OMPI_BRANCH="v5.0.6"
 
 # Update and Install basic Linux development tools
 RUN rm /etc/apt/sources.list.d/* \
@@ -46,7 +46,7 @@ ENV ROCM_HOME=/opt/rocm \
     OMPI_HOME=/opt/ompi
 
 # Until rocm base has it fixed
-RUN ln -s /opt/rocm/llvm/bin/offload-arch /opt/rocm/bin/offload-arch
+RUN ln -s /opt/rocm/llvm/bin/offload-arch /opt/rocm/bin/offload-arch | echo "offload-arch already exis"
 
 # Install tmpi
 RUN curl https://raw.githubusercontent.com/Azrael3000/tmpi/master/tmpi -o /usr/local/bin/tmpi
@@ -73,10 +73,14 @@ RUN cd /tmp/ \
         --without-knem \
         --without-xpmem  \
         --without-cuda \
+        --without-java \
+        --enable-mt \
         --enable-optimizations  \
         --disable-logging \
         --disable-debug \
         --disable-examples \
+        --disable-assertions \
+        --disable-params-check \
     && make -j ${nproc} \
     && make install
 
@@ -87,17 +91,22 @@ RUN cd /tmp \
     && ./autogen.pl \
     && mkdir build \
     && cd build \
-    && ../configure --prefix=$OMPI_HOME --with-ucx=$UCX_HOME \
-        CC=amdclang CXX=amdclang++ FC=amdflang F90=amdflang \
-        --enable-mca-no-build=btl-uct  \
+    && ../configure CC=amdclang CXX=amdclang++ FC=amdflang F90=amdflang \
+        --prefix=$OMPI_HOME \
+        --with-ucx=$UCX_HOME \
+        --with-rocm=$ROCM_HOME \
+        --enable-mca-no-build=btl-uct \
         --without-verbs \
-        --with-pmix  \
-        --enable-mpi \
-        --enable-mpi-fortran=yes \
+        --enable-mpi1-compatibility \
+        --enable-mpi-fortran=no \
         --disable-debug \
     && make -j ${nproc} \
     && make install
 
+# UCX config
+ENV UCX_WARN_UNUSED_ENV_VARS=n
+ENV UCX_TLS=sm,self,rocm,rocm_copy,rocm_ipc
+
 # Cleanup
 RUN rm -rf /tmp/ucx && rm -rf /tmp/ompi
 

docker/Dockerfile.cpu

@@ -18,7 +18,7 @@ RUN apt-get update && \
 # Install for basic base not containing it
 RUN apt-get install -y vim wget git flex libnuma-dev tmux \
         numactl hwloc curl \
-        autoconf libtool build-essential procps
+        autoconf libtool build-essential procps software-properties-common
 
 # Install tmpi
 RUN curl https://raw.githubusercontent.com/Azrael3000/tmpi/master/tmpi -o /usr/local/bin/tmpi
@@ -37,6 +37,12 @@ CMD ["/bin/bash"]
 ##############################################################
 FROM base as gcc
 
+# Install gcc 13 for better hardware and software support
+RUN add-apt-repository ppa:ubuntu-toolchain-r/test -y && apt update && \
+    apt install gcc-13 g++-13 -y && \
+    update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-13 100 && \
+    update-alternatives --install /usr/bin/g++ g++ /usr/bin/g++-13 100
+
 ARG OMPI_BRANCH="v4.1.4"
 # Install OpenMPI
 RUN mkdir -p /deps && mkdir -p /opt/openmpi && cd /deps && \
@@ -47,7 +53,7 @@ RUN mkdir -p /deps && mkdir -p /opt/openmpi && cd /deps && \
                  --enable-mca-no-build=btl-uct --enable-mpi1-compatibility && \
     make -j ${nproc} && \
     make install && \
-    rm -rf /deps/openmpi
+    cd /deps && rm -rf /deps/openmpi
 
 # Set OpenMPI path
 ENV PATH=${PATH}:/opt/openmpi/bin