deploy: 14ffa12

dgbowl · May 24, 2024 · 126399c · 126399c
1 parent d6becba
commit 126399c
Show file tree

Hide file tree

Showing 50 changed files with 355 additions and 7 deletions.
diff --git a/master/.doctrees/apidoc/yadg.extractors.doctree b/master/.doctrees/apidoc/yadg.extractors.doctree
diff --git a/master/.doctrees/apidoc/yadg.extractors.picolog.doctree b/master/.doctrees/apidoc/yadg.extractors.picolog.doctree
diff --git a/master/.doctrees/environment.pickle b/master/.doctrees/environment.pickle
diff --git a/master/.doctrees/extractors.doctree b/master/.doctrees/extractors.doctree
diff --git a/master/.doctrees/index.doctree b/master/.doctrees/index.doctree
diff --git a/master/.doctrees/version.5_1.doctree b/master/.doctrees/version.5_1.doctree
diff --git a/master/.doctrees/version.doctree b/master/.doctrees/version.doctree
diff --git a/master/_sources/apidoc/yadg.extractors.picolog.rst.txt b/master/_sources/apidoc/yadg.extractors.picolog.rst.txt
@@ -0,0 +1,16 @@
+**picolog**: For PicoTech PicoLog data
+======================================
+
+.. automodule:: yadg.extractors.picolog
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+
+yadg.extractors.picolog.tc08 module
+-----------------------------------
+
+.. automodule:: yadg.extractors.picolog.tc08
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/master/_sources/apidoc/yadg.extractors.rst.txt b/master/_sources/apidoc/yadg.extractors.rst.txt
@@ -23,6 +23,7 @@ Subpackages
    yadg.extractors.fusion
    yadg.extractors.panalytical
    yadg.extractors.phi
+   yadg.extractors.picolog
    yadg.extractors.quadstar
    yadg.extractors.tomato
    yadg.extractors.touchstone
diff --git a/master/_sources/version.5_1.rst.txt b/master/_sources/version.5_1.rst.txt
@@ -21,6 +21,8 @@ New features since ``yadg-5.0`` are:
 
   - Support for EZChrom ``.dat`` files using the :mod:`yadg.extractors.ezchrom.dat` extractor. Test files were provided by Z. Asahi from FU Berlin, and J. Schumann from HU Berlin. The data extracted from the ``.dat`` files is cross-checked against the data obtained from ``.asc`` files using the :mod:`yadg.extractors.ezchrom.asc` extractor.
 
+  - Support for PicoTech PicoLog ``.picolog`` files (such as those created by the TC-08 thermocouple monitor) using the :mod:`yadg.extractors.picolog.tc08` extractor. Test files were provided by F. Bernasconi from Empa.
+
 Other changes in ``yadg-5.1`` are:
 
   - The dataschema has been simplified, eliminating parsers in favour of extractors.

diff --git a/master/apidoc/yadg.dgutils.html b/master/apidoc/yadg.dgutils.html
@@ -69,6 +69,7 @@
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.fusion.html"><strong>fusion</strong>: For Fusion chromatograms</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.panalytical.html"><strong>panalytical</strong>: For Panalytical XRD data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.phi.html"><strong>phi</strong>: For Phi XPS data</a></li>
+<li class="toctree-l1"><a class="reference internal" href="yadg.extractors.picolog.html"><strong>picolog</strong>: For PicoTech PicoLog data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.quadstar.html"><strong>quadstar</strong>: For Quadstar MS data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.tomato.html"><strong>tomato</strong>: For tomato outputs</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.touchstone.html"><strong>touchstone</strong>: For Touchstone VNA files</a></li>

diff --git a/master/apidoc/yadg.extractors.agilent.html b/master/apidoc/yadg.extractors.agilent.html
@@ -104,6 +104,7 @@
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.fusion.html"><strong>fusion</strong>: For Fusion chromatograms</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.panalytical.html"><strong>panalytical</strong>: For Panalytical XRD data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.phi.html"><strong>phi</strong>: For Phi XPS data</a></li>
+<li class="toctree-l1"><a class="reference internal" href="yadg.extractors.picolog.html"><strong>picolog</strong>: For PicoTech PicoLog data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.quadstar.html"><strong>quadstar</strong>: For Quadstar MS data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.tomato.html"><strong>tomato</strong>: For tomato outputs</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.touchstone.html"><strong>touchstone</strong>: For Touchstone VNA files</a></li>

diff --git a/master/apidoc/yadg.extractors.basic.html b/master/apidoc/yadg.extractors.basic.html
@@ -82,6 +82,7 @@
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.fusion.html"><strong>fusion</strong>: For Fusion chromatograms</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.panalytical.html"><strong>panalytical</strong>: For Panalytical XRD data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.phi.html"><strong>phi</strong>: For Phi XPS data</a></li>
+<li class="toctree-l1"><a class="reference internal" href="yadg.extractors.picolog.html"><strong>picolog</strong>: For PicoTech PicoLog data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.quadstar.html"><strong>quadstar</strong>: For Quadstar MS data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.tomato.html"><strong>tomato</strong>: For tomato outputs</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.touchstone.html"><strong>touchstone</strong>: For Touchstone VNA files</a></li>

diff --git a/master/apidoc/yadg.extractors.drycal.html b/master/apidoc/yadg.extractors.drycal.html
@@ -117,6 +117,7 @@
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.fusion.html"><strong>fusion</strong>: For Fusion chromatograms</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.panalytical.html"><strong>panalytical</strong>: For Panalytical XRD data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.phi.html"><strong>phi</strong>: For Phi XPS data</a></li>
+<li class="toctree-l1"><a class="reference internal" href="yadg.extractors.picolog.html"><strong>picolog</strong>: For PicoTech PicoLog data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.quadstar.html"><strong>quadstar</strong>: For Quadstar MS data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.tomato.html"><strong>tomato</strong>: For tomato outputs</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.touchstone.html"><strong>touchstone</strong>: For Touchstone VNA files</a></li>

diff --git a/master/apidoc/yadg.extractors.eclab.common.html b/master/apidoc/yadg.extractors.eclab.common.html
@@ -79,6 +79,7 @@
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.fusion.html"><strong>fusion</strong>: For Fusion chromatograms</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.panalytical.html"><strong>panalytical</strong>: For Panalytical XRD data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.phi.html"><strong>phi</strong>: For Phi XPS data</a></li>
+<li class="toctree-l1"><a class="reference internal" href="yadg.extractors.picolog.html"><strong>picolog</strong>: For PicoTech PicoLog data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.quadstar.html"><strong>quadstar</strong>: For Quadstar MS data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.tomato.html"><strong>tomato</strong>: For tomato outputs</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.touchstone.html"><strong>touchstone</strong>: For Touchstone VNA files</a></li>

diff --git a/master/apidoc/yadg.extractors.eclab.html b/master/apidoc/yadg.extractors.eclab.html
@@ -108,6 +108,7 @@
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.fusion.html"><strong>fusion</strong>: For Fusion chromatograms</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.panalytical.html"><strong>panalytical</strong>: For Panalytical XRD data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.phi.html"><strong>phi</strong>: For Phi XPS data</a></li>
+<li class="toctree-l1"><a class="reference internal" href="yadg.extractors.picolog.html"><strong>picolog</strong>: For PicoTech PicoLog data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.quadstar.html"><strong>quadstar</strong>: For Quadstar MS data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.tomato.html"><strong>tomato</strong>: For tomato outputs</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.touchstone.html"><strong>touchstone</strong>: For Touchstone VNA files</a></li>

diff --git a/master/apidoc/yadg.extractors.empalc.html b/master/apidoc/yadg.extractors.empalc.html
@@ -91,6 +91,7 @@
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.fusion.html"><strong>fusion</strong>: For Fusion chromatograms</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.panalytical.html"><strong>panalytical</strong>: For Panalytical XRD data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.phi.html"><strong>phi</strong>: For Phi XPS data</a></li>
+<li class="toctree-l1"><a class="reference internal" href="yadg.extractors.picolog.html"><strong>picolog</strong>: For PicoTech PicoLog data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.quadstar.html"><strong>quadstar</strong>: For Quadstar MS data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.tomato.html"><strong>tomato</strong>: For tomato outputs</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.touchstone.html"><strong>touchstone</strong>: For Touchstone VNA files</a></li>

diff --git a/master/apidoc/yadg.extractors.example.html b/master/apidoc/yadg.extractors.example.html
@@ -83,6 +83,7 @@
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.fusion.html"><strong>fusion</strong>: For Fusion chromatograms</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.panalytical.html"><strong>panalytical</strong>: For Panalytical XRD data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.phi.html"><strong>phi</strong>: For Phi XPS data</a></li>
+<li class="toctree-l1"><a class="reference internal" href="yadg.extractors.picolog.html"><strong>picolog</strong>: For PicoTech PicoLog data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.quadstar.html"><strong>quadstar</strong>: For Quadstar MS data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.tomato.html"><strong>tomato</strong>: For tomato outputs</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.touchstone.html"><strong>touchstone</strong>: For Touchstone VNA files</a></li>

diff --git a/master/apidoc/yadg.extractors.ezchrom.html b/master/apidoc/yadg.extractors.ezchrom.html
@@ -94,6 +94,7 @@
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.fusion.html"><strong>fusion</strong>: For Fusion chromatograms</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.panalytical.html"><strong>panalytical</strong>: For Panalytical XRD data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.phi.html"><strong>phi</strong>: For Phi XPS data</a></li>
+<li class="toctree-l1"><a class="reference internal" href="yadg.extractors.picolog.html"><strong>picolog</strong>: For PicoTech PicoLog data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.quadstar.html"><strong>quadstar</strong>: For Quadstar MS data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.tomato.html"><strong>tomato</strong>: For tomato outputs</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.touchstone.html"><strong>touchstone</strong>: For Touchstone VNA files</a></li>

diff --git a/master/apidoc/yadg.extractors.fhimcpt.html b/master/apidoc/yadg.extractors.fhimcpt.html
@@ -92,6 +92,7 @@
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.fusion.html"><strong>fusion</strong>: For Fusion chromatograms</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.panalytical.html"><strong>panalytical</strong>: For Panalytical XRD data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.phi.html"><strong>phi</strong>: For Phi XPS data</a></li>
+<li class="toctree-l1"><a class="reference internal" href="yadg.extractors.picolog.html"><strong>picolog</strong>: For PicoTech PicoLog data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.quadstar.html"><strong>quadstar</strong>: For Quadstar MS data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.tomato.html"><strong>tomato</strong>: For tomato outputs</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.touchstone.html"><strong>touchstone</strong>: For Touchstone VNA files</a></li>

diff --git a/master/apidoc/yadg.extractors.fusion.html b/master/apidoc/yadg.extractors.fusion.html
@@ -104,6 +104,7 @@
 </li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.panalytical.html"><strong>panalytical</strong>: For Panalytical XRD data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.phi.html"><strong>phi</strong>: For Phi XPS data</a></li>
+<li class="toctree-l1"><a class="reference internal" href="yadg.extractors.picolog.html"><strong>picolog</strong>: For PicoTech PicoLog data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.quadstar.html"><strong>quadstar</strong>: For Quadstar MS data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.tomato.html"><strong>tomato</strong>: For tomato outputs</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.touchstone.html"><strong>touchstone</strong>: For Touchstone VNA files</a></li>

diff --git a/master/apidoc/yadg.extractors.html b/master/apidoc/yadg.extractors.html
@@ -69,6 +69,7 @@
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.fusion.html"><strong>fusion</strong>: For Fusion chromatograms</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.panalytical.html"><strong>panalytical</strong>: For Panalytical XRD data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.phi.html"><strong>phi</strong>: For Phi XPS data</a></li>
+<li class="toctree-l1"><a class="reference internal" href="yadg.extractors.picolog.html"><strong>picolog</strong>: For PicoTech PicoLog data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.quadstar.html"><strong>quadstar</strong>: For Quadstar MS data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.tomato.html"><strong>tomato</strong>: For tomato outputs</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.touchstone.html"><strong>touchstone</strong>: For Touchstone VNA files</a></li>
@@ -472,6 +473,21 @@ <h2>Subpackages<a class="headerlink" href="#subpackages" title="Link to this hea
 </li>
 </ul>
 </li>
+<li class="toctree-l1"><a class="reference internal" href="yadg.extractors.picolog.html"><strong>picolog</strong>: For PicoTech PicoLog data</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="yadg.extractors.picolog.html#module-yadg.extractors.picolog.tc08">yadg.extractors.picolog.tc08 module</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="yadg.extractors.picolog.html#usage">Usage</a><ul>
+<li class="toctree-l4"><a class="reference internal" href="yadg.extractors.picolog.html#dgbowl_schemas.yadg.dataschema_5_1.filetype.PicoLog_tc08"><code class="docutils literal notranslate"><span class="pre">PicoLog_tc08</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="yadg.extractors.picolog.html#schema">Schema</a></li>
+<li class="toctree-l3"><a class="reference internal" href="yadg.extractors.picolog.html#metadata">Metadata</a></li>
+<li class="toctree-l3"><a class="reference internal" href="yadg.extractors.picolog.html#uncertainties">Uncertainties</a></li>
+<li class="toctree-l3"><a class="reference internal" href="yadg.extractors.picolog.html#notes-on-file-structure">Notes on file structure</a></li>
+<li class="toctree-l3"><a class="reference internal" href="yadg.extractors.picolog.html#yadg.extractors.picolog.tc08.extract"><code class="docutils literal notranslate"><span class="pre">extract()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.quadstar.html"><strong>quadstar</strong>: For Quadstar MS data</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="yadg.extractors.quadstar.html#module-yadg.extractors.quadstar.sac">yadg.extractors.quadstar.sac module</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="yadg.extractors.quadstar.html#usage">Usage</a><ul>

diff --git a/master/apidoc/yadg.extractors.panalytical.html b/master/apidoc/yadg.extractors.panalytical.html
@@ -113,6 +113,7 @@
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.phi.html"><strong>phi</strong>: For Phi XPS data</a></li>
+<li class="toctree-l1"><a class="reference internal" href="yadg.extractors.picolog.html"><strong>picolog</strong>: For PicoTech PicoLog data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.quadstar.html"><strong>quadstar</strong>: For Quadstar MS data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.tomato.html"><strong>tomato</strong>: For tomato outputs</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.touchstone.html"><strong>touchstone</strong>: For Touchstone VNA files</a></li>

diff --git a/master/apidoc/yadg.extractors.phi.html b/master/apidoc/yadg.extractors.phi.html
@@ -22,7 +22,7 @@
     <script src="../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
-    <link rel="next" title="quadstar: For Quadstar MS data" href="yadg.extractors.quadstar.html" />
+    <link rel="next" title="picolog: For PicoTech PicoLog data" href="yadg.extractors.picolog.html" />
     <link rel="prev" title="panalytical: For Panalytical XRD data" href="yadg.extractors.panalytical.html" /> 
 </head>
 
@@ -84,6 +84,7 @@
 </li>
 </ul>
 </li>
+<li class="toctree-l1"><a class="reference internal" href="yadg.extractors.picolog.html"><strong>picolog</strong>: For PicoTech PicoLog data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.quadstar.html"><strong>quadstar</strong>: For Quadstar MS data</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.tomato.html"><strong>tomato</strong>: For tomato outputs</a></li>
 <li class="toctree-l1"><a class="reference internal" href="yadg.extractors.touchstone.html"><strong>touchstone</strong>: For Touchstone VNA files</a></li>
@@ -302,7 +303,7 @@ <h3>Uncertainties<a class="headerlink" href="#uncertainties" title="Link to this
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
         <a href="yadg.extractors.panalytical.html" class="btn btn-neutral float-left" title="panalytical: For Panalytical XRD data" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
-        <a href="yadg.extractors.quadstar.html" class="btn btn-neutral float-right" title="quadstar: For Quadstar MS data" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+        <a href="yadg.extractors.picolog.html" class="btn btn-neutral float-right" title="picolog: For PicoTech PicoLog data" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
 
   <hr/>