chore: update naming to avoid overlapping

NAMESPACE

@@ -93,7 +93,7 @@ export(spatPlot)
 export(spatPlot2D)
 export(spatPlot3D)
 export(subsetSankeySet)
-export(theme_dark)
+export(theme_dark2)
 export(violinPlot)
 exportClasses(giottoSankeyPlan)
 exportMethods("+")

R/gg_settings.R

@@ -31,12 +31,12 @@
 }
 
 
-#' @name theme_dark
-#' @title Dark plotting theme
+#' @name ggplot_themes
+#' @title ggplot2 plotting themes
 #' @description
-#' A default dark theme. It can be applied through the `theme_param`
+#' ggplot2 themes. It can be applied through the `theme_param` arg.
 #' @export
-theme_dark <- theme(
+theme_dark2 <- theme(
     plot.background = element_rect(fill = "black"),
     panel.background = element_rect(fill = "black"),
     panel.grid.major = element_blank(),

R/plot_dotplot.R

@@ -51,7 +51,8 @@
 #'     cluster_column = "leiden_clus",
 #'     feats = feats,
 #'     dot_size = mean,
-#'     dot_color = var
+#'     dot_color = var,
+#'     dot_color_gradient = c("#EEEEFF", "#333377")
 #' )
 #' @export
 dotPlot <- function(
@@ -301,8 +302,8 @@ dotPlot <- function(
         axis_title = axis_title,
         axis_text = axis_text,
         background_color = background_color,
-        axis.ticks = element_blank(),
-        axis_text_y_angle = 0
+        axis_text_y_angle = 0,
+        axis.ticks = element_blank()
     )
     pl <- pl + do.call(.gg_theme, args = gg_theme_args)