IN-500 make AF percent and order columns

eastgenomics · Oct 17, 2024 · 8c5c452 · 8c5c452
1 parent 37e64dd
commit 8c5c452
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/resources/home/dnanexus/generate_workbook/utils/vcf.py b/resources/home/dnanexus/generate_workbook/utils/vcf.py
@@ -443,10 +443,13 @@ def read_additional_files(self):
                 file_df = self.make_report_text([file_df])[0]
                 file_df = self.format_strings([file_df])[0]
                 file_df = self.add_hyperlinks([file_df])[0]
+                file_df = self.percent_af([file_df])[0]
 
                 if self.args.exclude or self.args.include:
                     self.drop_columns([file_df])
 
+                self.order_columns([file_df])
+
                 file_df.columns = self.strip_csq_prefix(file_df)
                 file_df = self.rename_columns([file_df])[0]
                 # force header to also be first line of df so it is written