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spacegaier/develop#97

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csparker247 wants to merge 247 commits intodevelopeducelab/volume-cartographer:developfrom sg-developeducelab/volume-cartographer:sg-developCopy head branch name to clipboard

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Commits

Commits on Apr 25, 2023

• first commit

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• initial commit

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Commits on Apr 27, 2023

• adding better caching

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• Verbose Cache Purging

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• Rename chain seg base class

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• (VC) Add ability to swap segmentation algorithms

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• cleanup

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Commits on Apr 29, 2023

• Improved Segmentation in Black Areas. Set Alpha between 0.0 (consider black areas) and 1.0 (only consider totaly white areas).

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• updated blackness region computation

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Commits on Apr 30, 2023

• added more parametrization to set when a point is inside/outside the sheet

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• detect outside of sheet by mean window pixel values instead of only current pixel

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• check mean and single pixel brightness value to determine if the pixel is outside the sheet

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• Merge remote-tracking branch 'updates-repo/gui-swappable-algorithms'

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• merging conflicts that were forgotten

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• updated VC to educelab newest version. and GUI implementation in progress

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Commits on May 3, 2023

• porting to own segmentation class and adding GUI

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Commits on May 4, 2023

• Adding GUI and documentation. Readme for Optical Flow Segmentation. Renaming Variables.

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Commits on May 8, 2023

• Optical Flow Segmentation ready for pull request

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• Optical Flow Segmentation Author

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Commits on May 14, 2023

• Requested Changes

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• Requested Changes

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• Requested Changes

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Commits on May 15, 2023

• (ofs) Interface cleanup

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• (ofs) Cleanup to compute

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• (ofs) Cleanup compute

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• (ofs) Rename class

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• (ofs) Cleanup gui stuff

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• (Volume) Use exclusive mutex for slice cache

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• Added Name to creators

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Commits on May 17, 2023

• Merge branch 'educelab:develop' into develop

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Commits on May 26, 2023

• Merge branch 'educelab:develop' into develop

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Commits on Jun 5, 2023

• OFS V2 alpha

  

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• OFS V2 Alpha Build

  

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• Added keyboard shortcuts shift + mousewheel for zoominh, 1-6 for next/prev slices, AD for impact range

  

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• Added keyboard shortcuts shift + mousewheel for zoominh, 1-6 for next/prev slices, AD for impact range

  

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• Added keyboard shortcuts shift + mousewheel for zoominh, 1-6 for next/prev slices, AD for impact range

  

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Commits on Jun 8, 2023

• Fixed segmentation, starting interpolation bug, propper volume bound check, reasonable caching, multithreaded caching bug fixed. introduced mouse back forth bug, increased line following speed

  

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• some changes

  

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Commits on Jun 9, 2023

• line not adjustable, wtf

  

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• addingdocker build workflow

  

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• addingdocker build workflow

  

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• addingdocker build workflow

  

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• V2 Alpha Working

  

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Commits on Jun 11, 2023

• Segmentation window resizable

  

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• Prefetching on Edit Segmentation

  

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Commits on Jun 14, 2023

• Merge remote-tracking branch 'public/develop' into merge-branch

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• Merge pull request #1 from schillij95/merge-branch

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Commits on Sep 8, 2023

• Reworked line module

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Commits on Sep 9, 2023

• Fixed line mouse clicks

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• Enable and Disable line view with SPACE key

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• Merge pull request #2 from schillij95/nightly

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Commits on Sep 11, 2023

• Adjusted build for docker.

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• Merge pull request #3 from schillij95/nightly

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Commits on Sep 12, 2023

• UI change for upcoming Multiline

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• UI change for upcoming Multiline

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• Some Improved Multithreading, pinpointed performance bottle nack to fix in upcoming updates

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• Docker file SDL adjustments

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• Merge pull request #4 from schillij95/nightly

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• Docker file SDL adjustments

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• docker easy

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• Complete Docker image

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Commits on Sep 14, 2023

• Multithreaded Extremely Large Segmentation Computation Update (>100x Speed Up)

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• Multithreaded Extremely Large Segmentation Computation Update (>100x Speed Up)

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Commits on Sep 15, 2023

• Beta Version Multiline Display + Segmentation

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• Beta Version Multiline Display + Segmentation

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• Beta Version Multiline Display + Segmentation

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Commits on Sep 16, 2023

• Beta Version Multiline Display + Segmentation

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• Beta Version Multiline Display + Segmentation

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• Beta Version Multiline Display + Segmentation

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• Beta Version Multiline Display + Segmentation

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• Beta Version Multiline Display + Segmentation

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• Beta Version Multiline Display + Segmentation

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Commits on Sep 17, 2023

• Adding Segmentation + Pen Tool Keybind, bugfix

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• Improved Check All Display/Compute Logic

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• Indicate Selected Curve

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• Changed Segmentation Keybinding to O

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• Persistent Line Color Settings

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• Shift Modifier to Jump to Segment Start

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• Shift Modifier to Jump to Segment Start

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• Alt Modifier to Jump to Segment End

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• Alt as well as Ctrl Modifier to Jump to Segment End

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Commits on Sep 18, 2023

• Only adjust Segments that are computable

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Commits on Sep 21, 2023

• Deactivating Slice Change during Segmentation and Drawing

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Commits on Sep 25, 2023

• Line Following on Selected Curve only, Selected curve Next/Previous Shortcuts added(Q/E)

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Commits on Oct 22, 2023

• - fix crashes from upstream

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• - use proper spin boxes for slice numbers (prevent string conversions and ensure proper value range)

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• - improve mouse wheel + shift (for scan) coding

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• Update changes in ReadMe

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• - implement image dragging via right mouse button

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Commits on Oct 23, 2023

• - added Ctrl + G to jump to slice

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• - prevent goto slice dialog if navigation is currently disabled

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• - unlock path table header while still matching column width to content

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• - switch away from obsolete QMouseEvent constructor

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• - ensure that backwards/forwards feature works with panning

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• - prevent dump during path removal, is there is none

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• - comment out center on mouse cursor during zooming for now

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• adjust about dialog

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• Merge panning-alt into develop

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• Merge 'settings-dlg' into 'develop'

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• Merge 'scan-in-seg-tool' into 'develop'

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• - final fixes for mouse handling (right mouse now purely for panning)

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• update ReadMe

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Commits on Oct 24, 2023

• limit curve changing to the slice the tool was started with

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• add "R" key hold + mouse wheel to change the impact range

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• change "R" to "S" for range impact wheel action

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• change "S" to "W" for range impact wheel action

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• - fixed random panning issue (non explicit starting value for last button var)

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Commits on Oct 25, 2023

• fix incorrect slice index being returned from OFS during interpolation

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• fix missing <mutex> build issue

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Commits on Oct 26, 2023

• - added Q/E shortcuts to set slice scan range in steps 1, 2, 5, 10, 20 and 100

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• - shorten hide delay for value popups in segment view

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Commits on Oct 30, 2023

• - fix potential issue with right click panning

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• - added configurable impact range steps

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• - fixed accidental line move after mouse side button usage

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Commits on Oct 31, 2023

• proper fix for incorrect slice index being returned by OFS (replaces 6708310)

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• annotation cloud

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• - track manually changed curve points

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• - manual anchor toggling

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• Merge ' develop' into 'anchoring'

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• - move to bitwise flags

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• - refine the algorithm parameter handling

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• fix annotation set merging

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Commits on Nov 1, 2023

• improve path list selection handling and allow J/K annotation viewing

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• Merge pull request #6 from educelab/develop

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• Merge pull request #7 from educelab/develop

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• - fix issue with starting value of impact range slider

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• Merge remote-tracking branch 'upstream/develop' into develop

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• added Mouse Wheel + R for panning along highlighted curve

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• added setting to adjust number of preloaded slices

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• Merge develop into anchoring

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• - swapped left and right dock

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Commits on Nov 2, 2023

• - made all docks closable and floatable

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• warn user about loss of curve changes when leaving seg tool

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• cleanup

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• Merge 'develop' into 'anchoring'

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• - new annotation "used in seg run"

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• remove trailing whitespaces

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Commits on Nov 3, 2023

• - annotation index fixes

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• fix start value of impact range slider

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• - fix issue with lower anchor on start index not being found

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• handle start = end index for annotation resets

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• - reworked seg run triggerin section

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• code formatting cleanup

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Commits on Nov 4, 2023

• implementation of new OFS trigger logic (split forward & backward)

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• bug fixes & cleanup

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• change default interpolation percentage to 30

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• - add coloring for manually changed curve points

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Commits on Nov 5, 2023

• move to std::variant for long and double annotations

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• bug fixes & extended debug output

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Commits on Nov 6, 2023

• fix unwantend interpolation percentage reset to 0

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• add slice number into annotations

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• add logic to handle cloud size mismatches

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• bug fixes

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• Merge branch 'develop' into 'anchoring'

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• add tooltips to color selectors

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• remove unused "HistEq" checkbox

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• disable remove path button if no path selected

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• reset "Display All" and "Compute All" checkbox state when closing volume

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• catch annotation loading exception and inform user

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• update ReadMe

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• fix OFS slice index issues

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• fix typo in ReadMe

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Commits on Nov 7, 2023

• adjust slice jump behavior after seg run (preference to explicit slice mode)

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• initial attempt

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• fix interpolation window calculation + extended console output

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• store last slice offset from seg run and re-use in next one

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• ensure seg length is at least 1

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Commits on Nov 8, 2023

• ensure Shift/Alt/Ctrl click on path list works again, together with the redraw safeguard

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• fix wrong interpolation window (slices before interpol start slice were also interpolated)

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• - improve "keep curves changes" dialog when leaving seg tool

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• grab correct resegmentation starting curve (off by 1)

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• evenly distribute anchor slices

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Commits on Nov 9, 2023

• - resample manually changed curves to space the points evenly

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• Merge branch 'anchoring' into 'step-size'

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• step-size adjustments after interpolation fixes

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• first working implementation (incl. interpolation in anchor mode)

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• added setting for user definable scan range steps

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• fix "Segmentation Tool" button sometimes being incorrectly disabled

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• improve jump slice determination for after seg run

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• add "50" to default list of scan range steps

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• evenly space points on starting curve after Pen Tool

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• move to remove_if simplification and fix edge cases

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• added user setting for initial step size

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• do not print annotation coordinates in user debug mode

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• improve "invalid volpkg structure" error message

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Commits on Nov 17, 2023

• added undo/redo for curve changes

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• properly end prefetch thread upon app closing

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• undo/redo fixes (it end checks & better before/after comparison)

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• set preloaded_slices setting as default cache size for seg run

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• lightly highlight every 10th and 20th curve point

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• undo coloring fixes

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• - color code the text popups next to cursor in segment viewer

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• disable the "evenly space points" button when not on edit slice

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• add app logo to VC

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• handle impact range changes during curve dragging

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• update ReadMe

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• properly init slice index of tool start

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• improve curve color handling to prevent hidden lines for bad color combos

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• move annotations dock to left as default

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• Merge branch 'step-size' into 'develop' (without actual step size logic)

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• add screenshots to ReadMe

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Commits on Nov 29, 2023

• only visually mark manually moved points on the highlighted curve

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• reuse volume buffers for volume display to avoid extra copies and conversions

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• Merge pull request #2 from jrudolph/spacegaier-speed-up-volume-viewer

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• Incorporate mmap changes from @jrudolph into the latest educelab merged code base

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• properly close the files again

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• add Y and Z as shortcuts for "Evenly space points"

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Commits on May 10, 2024

• properly handle compression (no mmap then) + added unit test

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• add compression info to logging

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• cleanup

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• Add SDL & GSL install to unit test GH action

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• Fix GH action apt-get install

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• Updated ReadMe

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Commits on May 13, 2024

• correct mismatch between zoom-in and zoom-out scaling factor

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• added view rotating via S+MouseWheel and X to reset

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• Update Dockerfile to use Node.js 20 actions

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• export QT_PLUGIN_PATH as Docker entrypoint

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• fix panning along the curve with view rotation

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Commits on May 18, 2024

• add user setting to override the view scroll speed

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Commits on May 20, 2024

• fix horizontal / AltGr view scrolling

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Commits on May 22, 2024

• added dark theme support

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Commits on May 26, 2024

• added spinbox for slice rotation

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• added shortcuts for view rotation

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• added "V" as shortcut to evenyl space points

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• adjusted slice scanning steps sizes on number keys

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• - speed up slice rendering by not recreating graphics scene items every time

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Commits on May 27, 2024

• - set new OFS defaults proposed by VC seg team

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• merge display-semi-transparent into develop

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• add user setting for experimental skipping of image format conversion

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• prevent reading the display segment opacity for each redrawing

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• set updated default in settings dialog class

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Commits on May 28, 2024

• make separation between internal and user settings clearer in code (fixes opacity regression)

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• - add more help buttons to user settings

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Commits on May 31, 2024

• Add en_US.UTF-8 locale to Dockerfile

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Commits on Jun 20, 2024

• Merge pull request #5 from stephenrparsons/develop

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