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Actions - slim updated
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actions-user committed Sep 1, 2024
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8 changes: 4 additions & 4 deletions external-dev/aopo-slim.owl
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Expand Up @@ -44,15 +44,15 @@
<terms:license rdf:resource="https://hpo.jax.org/app/license"/>
<pav:importedFrom>https://raw.githubusercontent.com/jmillanacosta/aop-ontology/patch-1/aopo.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-08-01 01:45:03</oboInOwl:date>
<oboInOwl:date>27:06:2024 21:25</oboInOwl:date>
<oboInOwl:date>2024-09-01 01:57:59</oboInOwl:date>
<oboInOwl:date>27:07:2024 19:59</oboInOwl:date>
<oboInOwl:default-namespace>chebi_ontology</oboInOwl:default-namespace>
<oboInOwl:default-namespace>human_phenotype</oboInOwl:default-namespace>
<oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
<oboInOwl:logical-definition-view-relation>has_part</oboInOwl:logical-definition-view-relation>
<oboInOwl:saved-by>chebi</oboInOwl:saved-by>
<rdfs:comment>Author: ChEBI curation team</rdfs:comment>
<rdfs:comment>ChEBI Release version 235</rdfs:comment>
<rdfs:comment>ChEBI Release version 236</rdfs:comment>
<rdfs:comment>ChEBI subsumes and replaces the Chemical Ontology first</rdfs:comment>
<rdfs:comment>Contact:
Stephan Schurer
Expand Down Expand Up @@ -102,7 +102,7 @@ Uma Vempati, Hande Küçük, Ubbo Visser, Saminda Abeyruwan, Kunie Sakurai, Vanc
<owl:versionInfo>2.8.6</owl:versionInfo>
<owl:versionInfo>2.8.8</owl:versionInfo>
<owl:versionInfo>2.8.9</owl:versionInfo>
<owl:versionInfo>2024-07-01</owl:versionInfo>
<owl:versionInfo>2024-08-13</owl:versionInfo>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
</owl:Ontology>

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2 changes: 1 addition & 1 deletion external-dev/bao-slim.owl
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Expand Up @@ -24,7 +24,7 @@
<dc:license rdf:resource="https://creativecommons.org/licenses/by-sa/4.0/"/>
<pav:importedFrom>http://bioassayontology.org/bao/bao_complete_merged.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-08-01 01:45:10</oboInOwl:date>
<oboInOwl:date>2024-09-01 01:58:07</oboInOwl:date>
<rdfs:comment>Contact:
Stephan Schurer
stephan dot schurer at gmail dot com</rdfs:comment>
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2 changes: 1 addition & 1 deletion external-dev/bfo-slim.owl
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Expand Up @@ -45,7 +45,7 @@
<dc:license rdf:resource="http://creativecommons.org/licenses/by/3.0/"/>
<pav:importedFrom>http://purl.obolibrary.org/obo/bfo/classes-only.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-08-01 01:45:12</oboInOwl:date>
<oboInOwl:date>2024-09-01 01:58:09</oboInOwl:date>
<rdfs:comment xml:lang="en">The http://purl.obolibary.org/obo/bfo/classes-only.owl variant of BFO (&quot;bfo_classes_only.owl&quot;) includes only the class hierarchy and annotations from the full OWL version of BFO 2: http://purl.obolibary.org/obo/bfo.owl (&quot;bfo.owl&quot;). There are no object properties or logical axioms that use the object properties in bfo_classes_only.owl. As the logical axioms in the bfo_classes_only.owl variant are limited to subclass and disjoint assertions they are much weaker than the logical axioms in bfo.owl.

If you plan to use the relations that define BFO 2, you should import bfo.owl instead of bfo_classes_only.owl. To the extent that the relations are used without importing bfo.owl, be mindful that they should be used in a manner consistent with their use in bfo.owl. Otherwise if your ontology is imported by a another ontology that imports bfo.owl there may be inconsistencies.
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2 changes: 1 addition & 1 deletion external-dev/bto-slim.owl
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Expand Up @@ -20,7 +20,7 @@
<pav:importedFrom>http://purl.obolibrary.org/obo/bto.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>OBO-Edit 2.3.1</oboInOwl:auto-generated-by>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-08-01 01:45:17</oboInOwl:date>
<oboInOwl:date>2024-09-01 01:58:14</oboInOwl:date>
<oboInOwl:date>23:10:2021 16:56</oboInOwl:date>
<oboInOwl:default-namespace>BrendaTissueOBO</oboInOwl:default-namespace>
<oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
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2 changes: 1 addition & 1 deletion external-dev/ccont-slim.owl
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Expand Up @@ -15,7 +15,7 @@
<pav:importedFrom>https://raw.githubusercontent.com/enanomapper/ontologies/master/internal/ccont-ext.owl</pav:importedFrom>
<efo:creator>Matthias Ganzinger, [email protected]</efo:creator>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-08-01 01:45:19</oboInOwl:date>
<oboInOwl:date>2024-09-01 01:58:15</oboInOwl:date>
<rdfs:label>cell culture ontology (CCONT)</rdfs:label>
<owl:versionInfo>1.1</owl:versionInfo>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
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6 changes: 3 additions & 3 deletions external-dev/chebi-slim.owl
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Expand Up @@ -17,13 +17,13 @@
<owl:Ontology rdf:about="http://purl.enanomapper.net/onto/external/chebi-slim.owl">
<pav:importedFrom>http://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi_lite.obo</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-08-01 01:46:07</oboInOwl:date>
<oboInOwl:date>27:06:2024 21:25</oboInOwl:date>
<oboInOwl:date>2024-09-01 01:59:54</oboInOwl:date>
<oboInOwl:date>27:07:2024 19:59</oboInOwl:date>
<oboInOwl:default-namespace>chebi_ontology</oboInOwl:default-namespace>
<oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
<oboInOwl:saved-by>chebi</oboInOwl:saved-by>
<rdfs:comment>Author: ChEBI curation team</rdfs:comment>
<rdfs:comment>ChEBI Release version 235</rdfs:comment>
<rdfs:comment>ChEBI Release version 236</rdfs:comment>
<rdfs:comment>ChEBI subsumes and replaces the Chemical Ontology first</rdfs:comment>
<rdfs:comment>For any queries contact [email protected]</rdfs:comment>
<rdfs:comment>developed by Michael Ashburner &amp; Pankaj Jaiswal.</rdfs:comment>
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2 changes: 1 addition & 1 deletion external-dev/cheminf-slim.owl
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Expand Up @@ -80,7 +80,7 @@
<terms:license>http://creativecommons.org/publicdomain/zero/1.0/</terms:license>
<pav:importedFrom>http://semanticchemistry.github.io/semanticchemistry/ontology/cheminf.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-08-01 01:45:21</oboInOwl:date>
<oboInOwl:date>2024-09-01 01:58:18</oboInOwl:date>
<rdfs:comment xml:lang="en">An information artifact is, loosely, a dependent continuant or its bearer that is created as the result of one or more intentional processes. Examples: uniprot, the english language, the contents of this document or a printout of it, the temperature measurements from a weather balloon. For more information, see the project home page at https://github.com/information-artifact-ontology/IAO</rdfs:comment>
<rdfs:comment>Document containing upporting external terms</rdfs:comment>
<rdfs:comment>IDs allocated to related efforts: PNO: IAO_0020000-IAO_0020999, D_ACTS: IAO_0021000-IAO_0021999</rdfs:comment>
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2 changes: 1 addition & 1 deletion external-dev/chmo-slim.owl
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Expand Up @@ -19,7 +19,7 @@
<terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
<pav:importedFrom>http://purl.obolibrary.org/obo/chmo.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-08-01 01:46:12</oboInOwl:date>
<oboInOwl:date>2024-09-01 01:59:59</oboInOwl:date>
<oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
<oboInOwl:saved-by>batchelorc</oboInOwl:saved-by>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
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4 changes: 2 additions & 2 deletions external-dev/clo-slim.owl
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Expand Up @@ -39,9 +39,9 @@
<terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
<pav:importedFrom>http://purl.obolibrary.org/obo/cl.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-08-01 01:46:25</oboInOwl:date>
<oboInOwl:date>2024-09-01 02:00:11</oboInOwl:date>
<rdfs:comment>See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, [email protected], university at buffalo.</rdfs:comment>
<owl:versionInfo>2024-07-10</owl:versionInfo>
<owl:versionInfo>2024-08-16</owl:versionInfo>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
</owl:Ontology>

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94 changes: 87 additions & 7 deletions external-dev/efo-slim.owl
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Expand Up @@ -55,9 +55,9 @@ License. </dc:rights>
<terms:license>www.apache.org/licenses/LICENSE-2.0</terms:license>
<pav:importedFrom>http://www.ebi.ac.uk/efo/efo.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-08-01 01:47:19</oboInOwl:date>
<rdfs:comment>2024-07-15</rdfs:comment>
<owl:versionInfo>3.68.0</owl:versionInfo>
<oboInOwl:date>2024-09-01 02:01:08</oboInOwl:date>
<rdfs:comment>2024-08-15</rdfs:comment>
<owl:versionInfo>3.69.0</owl:versionInfo>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
</owl:Ontology>

Expand Down Expand Up @@ -29409,6 +29409,7 @@ http://humupd.oxfordjournals.org/content/13/2/103.full</rdfs:comment>


<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0006335">
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0004298"/>
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0004325"/>
<obo:IAO_0000115>The blood pressure during the contraction of the left ventricle of the heart.</obo:IAO_0000115>
<obo:IAO_0000117>Dani Welter</obo:IAO_0000117>
Expand All @@ -29427,6 +29428,7 @@ http://humupd.oxfordjournals.org/content/13/2/103.full</rdfs:comment>


<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0006336">
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0004298"/>
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0004325"/>
<obo:IAO_0000115>The blood pressure after the contraction of the heart while the chambers of the heart refill with blood.</obo:IAO_0000115>
<obo:IAO_0000117>Dani Welter</obo:IAO_0000117>
Expand All @@ -29445,6 +29447,7 @@ http://humupd.oxfordjournals.org/content/13/2/103.full</rdfs:comment>


<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0006340">
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0004298"/>
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0004325"/>
<obo:IAO_0000115>The mean pressure of the blood within the arterial circulation. The arterial pressure may be directly measured by insertion of an intra-arterial catheter connected to a transducer. The mean arterial pressure (MAP) can be calculated by subsequent analysis of the waveform. MAP can be approximated without an invasive procedure using the following formula: diastolic pressure plus 1/3 of the pulse pressure, where pulse pressure is systolic pressure - diastolic pressure.</obo:IAO_0000115>
<obo:IAO_0000117>Dani Welter</obo:IAO_0000117>
Expand Down Expand Up @@ -56709,7 +56712,7 @@ of diseased coronary vessels at the time of a catheterization procedure. The var
<obo:IAO_0000117>Joannella Morales</obo:IAO_0000117>
<efo:gwas_trait rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</efo:gwas_trait>
<oboInOwl:hasDbXref>PMID:23823483</oboInOwl:hasDbXref>
<rdfs:label xml:lang="en">adipic acid mesurement</rdfs:label>
<rdfs:label xml:lang="en">adipic acid measurement</rdfs:label>
</owl:Class>


Expand Down Expand Up @@ -57347,7 +57350,7 @@ of diseased coronary vessels at the time of a catheterization procedure. The var
<obo:IAO_0000117>Joannella Morales</obo:IAO_0000117>
<efo:gwas_trait rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</efo:gwas_trait>
<oboInOwl:hasDbXref>PMID:23823483</oboInOwl:hasDbXref>
<rdfs:label xml:lang="en">hypoxanthine mesurement</rdfs:label>
<rdfs:label xml:lang="en">hypoxanthine measurement</rdfs:label>
</owl:Class>


Expand Down Expand Up @@ -57610,7 +57613,7 @@ of diseased coronary vessels at the time of a catheterization procedure. The var
<obo:IAO_0000117>Joannella Morales</obo:IAO_0000117>
<efo:gwas_trait rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</efo:gwas_trait>
<oboInOwl:hasDbXref>PMID:23823483</oboInOwl:hasDbXref>
<rdfs:label xml:lang="en">pantothenic acid mesurement</rdfs:label>
<rdfs:label xml:lang="en">pantothenic acid measurement</rdfs:label>
</owl:Class>


Expand Down Expand Up @@ -101457,6 +101460,42 @@ of diseased coronary vessels at the time of a catheterization procedure. The var



<!-- http://www.ebi.ac.uk/efo/EFO_0022838 -->


<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0022838">
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0005740"/>
<obo:IAO_0000115>An immortalized human erythroid progenitor cell line.</obo:IAO_0000115>
<dc:creator>Zoe May Pendlington</dc:creator>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2024-08-07T12:56:51Z</dc:date>
<oboInOwl:hasDbXref>RRID:CVCL_VI06</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym>HUDEP2</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>Human Umbilical cord blood-Derived Erythroid Progenitor-2</oboInOwl:hasExactSynonym>
<rdfs:label xml:lang="en">HUDEP-2</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0022838"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>An immortalized human erythroid progenitor cell line.</owl:annotatedTarget>
<efo:definition_citation>PMID:23533656</efo:definition_citation>
</owl:Axiom>



<!-- http://www.ebi.ac.uk/efo/EFO_0022842 -->


<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0022842">
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0004554"/>
<obo:IAO_0000115>It is the most common clonal somatic alteration in leukocytes of female individuals.</obo:IAO_0000115>
<dc:creator>Zoe May Pendlington</dc:creator>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2024-08-14T09:43:25Z</dc:date>
<oboInOwl:hasExactSynonym>mLOX</oboInOwl:hasExactSynonym>
<rdfs:label xml:lang="en">mosaic loss of chromosome X measurement</rdfs:label>
</owl:Class>



<!-- http://www.ebi.ac.uk/efo/EFO_0030018 -->


Expand Down Expand Up @@ -149850,7 +149889,7 @@ of diseased coronary vessels at the time of a catheterization procedure. The var
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0009700"/>
<obo:IAO_0000115>Quantification of visual masking, a phenomenon of visual perception which occurs when the visibility of one image, called a target, is reduced by the presence of another, called a mask. Timing arrangements include forward masking, backward masking, and simultaneous masking. Spatial arrangements include pattern masking and metacontrast. Visual masking deficits are potential schizophrenia endophenotypes.</obo:IAO_0000115>
<efo:gwas_trait rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</efo:gwas_trait>
<rdfs:label xml:lang="en">visual masking mesurement</rdfs:label>
<rdfs:label xml:lang="en">visual masking measurement</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0803378"/>
Expand Down Expand Up @@ -154961,6 +155000,47 @@ of diseased coronary vessels at the time of a catheterization procedure. The var



<!-- http://www.ebi.ac.uk/efo/EFO_0803690 -->


<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0803690">
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0004556"/>
<obo:IAO_0000115>Quantification of one or more antibodies to the hepatitis E virus in a sample.</obo:IAO_0000115>
<oboInOwl:hasDbXref>PMID:37664632</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym>anti-HEV antibody measurement</oboInOwl:hasExactSynonym>
<rdfs:comment>To be reviewed for replacement with OBA term.</rdfs:comment>
<rdfs:label>anti-hepatitis E virus antibody measurement</rdfs:label>
</owl:Class>



<!-- http://www.ebi.ac.uk/efo/EFO_0803691 -->


<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0803691">
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0004556"/>
<obo:IAO_0000115>Quantification of one or more antibodies to the superantigen toxic shock syndrome toxin-1 (TSST-1) produced by Staphylococcus aureus in a sample.</obo:IAO_0000115>
<oboInOwl:hasDbXref>PMID:37731490</oboInOwl:hasDbXref>
<rdfs:comment>To be reviewed for replacement with OBA term.</rdfs:comment>
<rdfs:label>anti-TSST-1 antibody measurement</rdfs:label>
</owl:Class>



<!-- http://www.ebi.ac.uk/efo/EFO_0803692 -->


<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0803692">
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0004556"/>
<obo:IAO_0000115>Quantification of one or more antibodies to the hepatitis B virus anitgen in a sample.</obo:IAO_0000115>
<oboInOwl:hasDbXref>PMID:38626723</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym>anti-HBV antibody measurement</oboInOwl:hasExactSynonym>
<rdfs:comment>To be reviewed for replacement with OBA term.</rdfs:comment>
<rdfs:label>anti-hepatitis B virus antibody measurement</rdfs:label>
</owl:Class>



<!--
///////////////////////////////////////////////////////////////////////////////////////
//
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2 changes: 1 addition & 1 deletion external-dev/envo-slim.owl
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Expand Up @@ -35,7 +35,7 @@
<doap:GitRepository rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/EnvironmentOntology/envo/</doap:GitRepository>
<doap:bug-database rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/EnvironmentOntology/envo/issues/</doap:bug-database>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-08-01 01:47:26</oboInOwl:date>
<oboInOwl:date>2024-09-01 02:01:15</oboInOwl:date>
<oboInOwl:default-namespace>ENVO</oboInOwl:default-namespace>
<rdfs:comment>Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/envo/modules/chemical_concentration.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 679 Logical Axioms: 119]</rdfs:comment>
<rdfs:comment>Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/envo/modules/entity_attribute.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 206 Logical Axioms: 34]</rdfs:comment>
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2 changes: 1 addition & 1 deletion external-dev/fabio-slim.owl
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Expand Up @@ -33,7 +33,7 @@ FaBiO classes are structured according to the FRBR schema of Works, Expressions,
<vann:preferredNamespacePrefix>fabio</vann:preferredNamespacePrefix>
<vann:preferredNamespaceUri rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.org/spar/fabio/</vann:preferredNamespaceUri>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-08-01 01:47:31</oboInOwl:date>
<oboInOwl:date>2024-09-01 02:01:21</oboInOwl:date>
<rdfs:comment>FaBiO, the FRBR-aligned Bibliographic Ontology, is an ontology for recording and publishing on the Semantic Web bibliographic records of scholarly endeavours. It forms part of SPAR, a suite of Semantic Publishing and Referencing Ontologies. Other SPAR ontologies are described at http://purl.org/spar/.

This ontology is available at http://purl.org/spar/fabio, and uses the namespace prefix fabio.</rdfs:comment>
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