Actions - slim updated

enanomapper · Mar 21, 2024 · 2fb9acd · 2fb9acd
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diff --git a/external-dev/aopo-slim.owl b/external-dev/aopo-slim.owl
@@ -44,7 +44,7 @@
         <terms:license rdf:resource="https://hpo.jax.org/app/license"/>
         <pav:importedFrom>https://raw.githubusercontent.com/jmillanacosta/aop-ontology/patch-1/aopo.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-03-21 14:05:33</oboInOwl:date>
+        <oboInOwl:date>2024-03-21 16:20:13</oboInOwl:date>
         <oboInOwl:date>27:02:2024 20:11</oboInOwl:date>
         <oboInOwl:default-namespace>chebi_ontology</oboInOwl:default-namespace>
         <oboInOwl:default-namespace>human_phenotype</oboInOwl:default-namespace>

diff --git a/external-dev/bao-slim.owl b/external-dev/bao-slim.owl
@@ -24,7 +24,7 @@
         <dc:license rdf:resource="https://creativecommons.org/licenses/by-sa/4.0/"/>
         <pav:importedFrom>http://bioassayontology.org/bao/bao_complete_merged.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-03-21 14:05:46</oboInOwl:date>
+        <oboInOwl:date>2024-03-21 16:20:22</oboInOwl:date>
         <rdfs:comment>Contact:
 Stephan Schurer
 stephan dot schurer at gmail dot com</rdfs:comment>

diff --git a/external-dev/bfo-slim.owl b/external-dev/bfo-slim.owl
@@ -45,7 +45,7 @@
         <dc:license rdf:resource="http://creativecommons.org/licenses/by/3.0/"/>
         <pav:importedFrom>http://purl.obolibrary.org/obo/bfo/classes-only.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-03-21 14:05:49</oboInOwl:date>
+        <oboInOwl:date>2024-03-21 16:20:24</oboInOwl:date>
         <rdfs:comment xml:lang="en">The http://purl.obolibary.org/obo/bfo/classes-only.owl variant of BFO (&quot;bfo_classes_only.owl&quot;) includes only the class hierarchy and annotations from the full OWL version of BFO 2: http://purl.obolibary.org/obo/bfo.owl (&quot;bfo.owl&quot;). There are no object properties or logical axioms that use the object properties in bfo_classes_only.owl. As the logical axioms in the bfo_classes_only.owl variant are limited to subclass and disjoint assertions they are much weaker than the logical axioms in bfo.owl.
 
 If you plan to use the relations that define BFO 2, you should import bfo.owl instead of bfo_classes_only.owl. To the extent that the relations are used without importing bfo.owl, be mindful that they should be used in a manner consistent with their use in bfo.owl. Otherwise if your ontology is imported by a another ontology that imports bfo.owl there may be inconsistencies. 

diff --git a/external-dev/bto-slim.owl b/external-dev/bto-slim.owl
@@ -20,7 +20,7 @@
         <pav:importedFrom>http://purl.obolibrary.org/obo/bto.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>OBO-Edit 2.3.1</oboInOwl:auto-generated-by>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-03-21 14:05:54</oboInOwl:date>
+        <oboInOwl:date>2024-03-21 16:20:29</oboInOwl:date>
         <oboInOwl:date>23:10:2021 16:56</oboInOwl:date>
         <oboInOwl:default-namespace>BrendaTissueOBO</oboInOwl:default-namespace>
         <oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>

diff --git a/external-dev/ccont-slim.owl b/external-dev/ccont-slim.owl
@@ -15,7 +15,7 @@
         <pav:importedFrom>https://raw.githubusercontent.com/enanomapper/ontologies/master/internal/ccont-ext.owl</pav:importedFrom>
         <efo:creator>Matthias Ganzinger, [email protected]</efo:creator>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-03-21 14:05:56</oboInOwl:date>
+        <oboInOwl:date>2024-03-21 16:20:31</oboInOwl:date>
         <rdfs:label>cell culture ontology (CCONT)</rdfs:label>
         <owl:versionInfo>1.1</owl:versionInfo>
         <owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>

diff --git a/external-dev/chebi-slim.owl b/external-dev/chebi-slim.owl
@@ -17,7 +17,7 @@
     <owl:Ontology rdf:about="http://purl.enanomapper.net/onto/external/chebi-slim.owl">
         <pav:importedFrom>http://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi_lite.obo</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-03-21 14:08:30</oboInOwl:date>
+        <oboInOwl:date>2024-03-21 16:22:23</oboInOwl:date>
         <oboInOwl:date>27:02:2024 20:11</oboInOwl:date>
         <oboInOwl:default-namespace>chebi_ontology</oboInOwl:default-namespace>
         <oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>

diff --git a/external-dev/cheminf-slim.owl b/external-dev/cheminf-slim.owl
@@ -79,7 +79,7 @@
         <terms:license>http://creativecommons.org/publicdomain/zero/1.0/</terms:license>
         <pav:importedFrom>http://semanticchemistry.github.io/semanticchemistry/ontology/cheminf.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-03-21 14:06:00</oboInOwl:date>
+        <oboInOwl:date>2024-03-21 16:20:34</oboInOwl:date>
         <rdfs:comment xml:lang="en">An information artifact is, loosely, a dependent continuant or its bearer that is created as the result of one or more intentional processes. Examples: uniprot, the english language, the contents of this document or a printout of it, the temperature measurements from a weather balloon. For more information, see the project home page at https://github.com/information-artifact-ontology/IAO</rdfs:comment>
         <rdfs:comment>Document containing upporting external terms</rdfs:comment>
         <rdfs:comment>IDs allocated to related efforts: PNO: IAO_0020000-IAO_0020999, D_ACTS: IAO_0021000-IAO_0021999</rdfs:comment>

diff --git a/external-dev/chmo-slim.owl b/external-dev/chmo-slim.owl
@@ -19,7 +19,7 @@
         <terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
         <pav:importedFrom>http://purl.obolibrary.org/obo/chmo.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-03-21 14:08:36</oboInOwl:date>
+        <oboInOwl:date>2024-03-21 16:22:29</oboInOwl:date>
         <oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
         <oboInOwl:saved-by>batchelorc</oboInOwl:saved-by>
         <owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>

diff --git a/external-dev/clo-slim.owl b/external-dev/clo-slim.owl
@@ -45,7 +45,7 @@
         <terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
         <pav:importedFrom>http://purl.obolibrary.org/obo/cl.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-03-21 14:08:49</oboInOwl:date>
+        <oboInOwl:date>2024-03-21 16:22:41</oboInOwl:date>
         <rdfs:comment>See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, [email protected], University at Buffalo.</rdfs:comment>
         <owl:versionInfo>2024-02-13</owl:versionInfo>
         <owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>

diff --git a/external-dev/efo-slim.owl b/external-dev/efo-slim.owl
@@ -55,7 +55,7 @@ License. </dc:rights>
         <terms:license>www.apache.org/licenses/LICENSE-2.0</terms:license>
         <pav:importedFrom>http://www.ebi.ac.uk/efo/efo.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-03-21 14:09:53</oboInOwl:date>
+        <oboInOwl:date>2024-03-21 16:24:21</oboInOwl:date>
         <rdfs:comment>2024-03-18</rdfs:comment>
         <owl:versionInfo>3.64.0</owl:versionInfo>
         <owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>

diff --git a/external-dev/envo-slim.owl b/external-dev/envo-slim.owl
@@ -35,7 +35,7 @@
         <doap:GitRepository rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/EnvironmentOntology/envo/</doap:GitRepository>
         <doap:bug-database rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/EnvironmentOntology/envo/issues/</doap:bug-database>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-03-21 14:10:01</oboInOwl:date>
+        <oboInOwl:date>2024-03-21 16:24:27</oboInOwl:date>
         <oboInOwl:default-namespace>ENVO</oboInOwl:default-namespace>
         <rdfs:comment>Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/envo/modules/chemical_concentration.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 679 Logical Axioms: 119]</rdfs:comment>
         <rdfs:comment>Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/envo/modules/entity_attribute.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 206 Logical Axioms: 34]</rdfs:comment>

diff --git a/external-dev/fabio-slim.owl b/external-dev/fabio-slim.owl
@@ -33,7 +33,7 @@ FaBiO classes are structured according to the FRBR schema of Works, Expressions,
         <vann:preferredNamespacePrefix>fabio</vann:preferredNamespacePrefix>
         <vann:preferredNamespaceUri rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.org/spar/fabio/</vann:preferredNamespaceUri>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-03-21 14:10:05</oboInOwl:date>
+        <oboInOwl:date>2024-03-21 16:24:33</oboInOwl:date>
         <rdfs:comment>FaBiO, the FRBR-aligned Bibliographic Ontology, is an ontology for recording and publishing on the Semantic Web bibliographic records of scholarly endeavours. It forms part of SPAR, a suite of Semantic Publishing and Referencing Ontologies.  Other SPAR ontologies are described at http://purl.org/spar/.
 
 This ontology is available at http://purl.org/spar/fabio, and uses the namespace prefix fabio.</rdfs:comment>

diff --git a/external-dev/go-slim.owl b/external-dev/go-slim.owl
@@ -24,7 +24,7 @@
         <terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
         <pav:importedFrom>http://purl.obolibrary.org/obo/go.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-03-21 14:10:27</oboInOwl:date>
+        <oboInOwl:date>2024-03-21 16:24:55</oboInOwl:date>
         <oboInOwl:default-namespace>gene_ontology</oboInOwl:default-namespace>
         <oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
         <owl:versionInfo>2024-01-17</owl:versionInfo>
@@ -735,6 +735,33 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/GO_0043280 -->
+
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0043280">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0009987"/>
+        <obo:IAO_0000115>Any process that activates or increases the activity of a cysteine-type endopeptidase involved in the apoptotic process.</obo:IAO_0000115>
+        <oboInOwl:hasBroadSynonym>positive regulation of caspase activity</oboInOwl:hasBroadSynonym>
+        <oboInOwl:hasExactSynonym>up regulation of caspase activity</oboInOwl:hasExactSynonym>
+        <oboInOwl:hasExactSynonym>up-regulation of caspase activity</oboInOwl:hasExactSynonym>
+        <oboInOwl:hasExactSynonym>upregulation of caspase activity</oboInOwl:hasExactSynonym>
+        <oboInOwl:hasNarrowSynonym>activation of caspase activity</oboInOwl:hasNarrowSynonym>
+        <oboInOwl:hasNarrowSynonym>stimulation of caspase activity</oboInOwl:hasNarrowSynonym>
+        <oboInOwl:hasOBONamespace>biological_process</oboInOwl:hasOBONamespace>
+        <oboInOwl:id>GO:0043280</oboInOwl:id>
+        <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate"/>
+        <rdfs:label>positive regulation of cysteine-type endopeptidase activity involved in apoptotic process</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/GO_0043280"/>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget>Any process that activates or increases the activity of a cysteine-type endopeptidase involved in the apoptotic process.</owl:annotatedTarget>
+        <oboInOwl:hasDbXref>GOC:jl</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>GOC:mtg_apoptosis</oboInOwl:hasDbXref>
+    </owl:Axiom>
+
+
+
     <!-- http://purl.obolibrary.org/obo/GO_0048519 -->
 
 
@@ -761,6 +788,33 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/GO_0048522 -->
+
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0048522">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0009987"/>
+        <obo:IAO_0000115>Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.</obo:IAO_0000115>
+        <oboInOwl:hasAlternativeId>GO:0051242</oboInOwl:hasAlternativeId>
+        <oboInOwl:hasExactSynonym>positive regulation of cellular physiological process</oboInOwl:hasExactSynonym>
+        <oboInOwl:hasExactSynonym>up regulation of cellular process</oboInOwl:hasExactSynonym>
+        <oboInOwl:hasExactSynonym>up-regulation of cellular process</oboInOwl:hasExactSynonym>
+        <oboInOwl:hasExactSynonym>upregulation of cellular process</oboInOwl:hasExactSynonym>
+        <oboInOwl:hasNarrowSynonym>activation of cellular process</oboInOwl:hasNarrowSynonym>
+        <oboInOwl:hasNarrowSynonym>stimulation of cellular process</oboInOwl:hasNarrowSynonym>
+        <oboInOwl:hasOBONamespace>biological_process</oboInOwl:hasOBONamespace>
+        <oboInOwl:id>GO:0048522</oboInOwl:id>
+        <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate"/>
+        <rdfs:label>positive regulation of cellular process</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/GO_0048522"/>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget>Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.</owl:annotatedTarget>
+        <oboInOwl:hasDbXref>GOC:jid</oboInOwl:hasDbXref>
+    </owl:Axiom>
+
+
+
     <!-- http://purl.obolibrary.org/obo/GO_0050663 -->
 
 
@@ -789,12 +843,6 @@
         <oboInOwl:id>GO:0051494</oboInOwl:id>
         <rdfs:label>negative regulation of cytoskeleton organization</rdfs:label>
     </owl:Class>
-    <owl:Axiom>
-        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/GO_0051494"/>
-        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
-        <owl:annotatedTarget>Any process that stops, prevents, or reduces the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures.</owl:annotatedTarget>
-        <oboInOwl:hasDbXref>GOC:ai</oboInOwl:hasDbXref>
-    </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/GO_0051494"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
@@ -807,6 +855,12 @@
         <owl:annotatedTarget>negative regulation of cytoskeleton organization and biogenesis</owl:annotatedTarget>
         <oboInOwl:hasDbXref>GOC:mah</oboInOwl:hasDbXref>
     </owl:Axiom>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/GO_0051494"/>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget>Any process that stops, prevents, or reduces the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures.</owl:annotatedTarget>
+        <oboInOwl:hasDbXref>GOC:ai</oboInOwl:hasDbXref>
+    </owl:Axiom>
 
 
 

diff --git a/external-dev/iao-slim.owl b/external-dev/iao-slim.owl
@@ -57,7 +57,7 @@
         <terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
         <pav:importedFrom>http://purl.obolibrary.org/obo/iao.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-03-21 14:10:29</oboInOwl:date>
+        <oboInOwl:date>2024-03-21 16:24:57</oboInOwl:date>
         <rdfs:comment xml:lang="en">An information artifact is, loosely, a dependent continuant or its bearer that is created as the result of one or more intentional processes. Examples: uniprot, the english language, the contents of this document or a printout of it, the temperature measurements from a weather balloon. For more information, see the project home page at https://github.com/information-artifact-ontology/IAO</rdfs:comment>
         <rdfs:comment>IDs allocated to related efforts: PNO: IAO_0020000-IAO_0020999, D_ACTS: IAO_0021000-IAO_0021999</rdfs:comment>
         <rdfs:comment>IDs allocated to subdomains of IAO. pno.owl: IAO_0020000-IAO_0020999, d-acts.owl: IAO_0021000-IAO_0021999</rdfs:comment>

diff --git a/external-dev/msio-slim.owl b/external-dev/msio-slim.owl
@@ -181,7 +181,7 @@ http://www.cosmos-fp7.eu/WP2</doap:maintainer>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
         <oboInOwl:created_by xml:lang="en">Daniel Schober</oboInOwl:created_by>
         <oboInOwl:creation_date xml:lang="en">2017-10-19T10:11:26Z</oboInOwl:creation_date>
-        <oboInOwl:date>2024-03-21 14:13:38</oboInOwl:date>
+        <oboInOwl:date>2024-03-21 16:27:59</oboInOwl:date>
         <rdfs:comment xml:lang="en">Please see the project site https://github.com/BFO-ontology/BFO, the bfo2 owl discussion group http://groups.google.com/group/bfo-owl-devel, the bfo2 discussion group http://groups.google.com/group/bfo-devel, the tracking google doc http://goo.gl/IlrEE, and the current version of the bfo2 reference http://purl.obolibrary.org/obo/bfo/dev/bfo2-reference.docx. This ontology is generated from a specification at https://github.com/BFO-ontology/BFO/tree/master/src/ontology/owl-group/specification/ and with the code that generates the OWL version in https://github.com/BFO-ontology/BFO/tree/master/src/tools/. A very early version of BFO version 2 in CLIF is at http://purl.obolibrary.org/obo/bfo/dev/bfo.clif.</rdfs:comment>
         <rdfs:comment xml:lang="en">The BSD license on the BFO project site refers to code used to build BFO.</rdfs:comment>
         <rdfs:comment xml:lang="en">This version (1.1.0) uses the Basic Formal Ontology (BFO) as its top level ontology.  We might at some point close the resulting semantic gap by using OBI and IAO as intermediate bridges.</rdfs:comment>

diff --git a/external-dev/ncit-slim.owl b/external-dev/ncit-slim.owl
@@ -21,7 +21,7 @@
         <terms:title>NCI Thesaurus OBO Edition</terms:title>
         <pav:importedFrom>http://purl.obolibrary.org/obo/ncit.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-03-21 14:12:34</oboInOwl:date>
+        <oboInOwl:date>2024-03-21 16:27:06</oboInOwl:date>
         <rdfs:comment>NCI Thesaurus, a controlled vocabulary in support of NCI administrative and scientific activities. Produced by the Enterprise Vocabulary System (EVS), a project by the NCI Center for Biomedical Informatics and Information Technology. National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, U.S.A.</rdfs:comment>
         <owl:versionInfo>23.09d</owl:versionInfo>
         <owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>