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Actions - slim updated
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actions-user committed Mar 21, 2024
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43 changes: 10 additions & 33 deletions external-dev/aopo-slim.owl
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Expand Up @@ -44,15 +44,15 @@
<terms:license rdf:resource="https://hpo.jax.org/app/license"/>
<pav:importedFrom>https://raw.githubusercontent.com/jmillanacosta/aop-ontology/patch-1/aopo.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-03-01 01:24:35</oboInOwl:date>
<oboInOwl:date>29:01:2024 14:32</oboInOwl:date>
<oboInOwl:date>2024-03-21 13:09:01</oboInOwl:date>
<oboInOwl:date>27:02:2024 20:11</oboInOwl:date>
<oboInOwl:default-namespace>chebi_ontology</oboInOwl:default-namespace>
<oboInOwl:default-namespace>human_phenotype</oboInOwl:default-namespace>
<oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
<oboInOwl:logical-definition-view-relation>has_part</oboInOwl:logical-definition-view-relation>
<oboInOwl:saved-by>chebi</oboInOwl:saved-by>
<rdfs:comment>Author: ChEBI curation team</rdfs:comment>
<rdfs:comment>ChEBI Release version 230</rdfs:comment>
<rdfs:comment>ChEBI Release version 231</rdfs:comment>
<rdfs:comment>ChEBI subsumes and replaces the Chemical Ontology first</rdfs:comment>
<rdfs:comment>Contact:
Stephan Schurer
Expand Down Expand Up @@ -102,7 +102,7 @@ Uma Vempati, Hande Küçük, Ubbo Visser, Saminda Abeyruwan, Kunie Sakurai, Vanc
<owl:versionInfo>2.8.6</owl:versionInfo>
<owl:versionInfo>2.8.8</owl:versionInfo>
<owl:versionInfo>2.8.9</owl:versionInfo>
<owl:versionInfo>2024-02-08</owl:versionInfo>
<owl:versionInfo>2024-03-06</owl:versionInfo>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
</owl:Ontology>

Expand Down Expand Up @@ -155,7 +155,6 @@ Uma Vempati, Hande Küçük, Ubbo Visser, Saminda Abeyruwan, Kunie Sakurai, Vanc
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2022-09-04T11:14:13Z</dc:date>
<terms:creator rdf:resource="https://orcid.org/0000-0002-0736-9199"/>
<rdfs:label>allelic_requirement</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
</owl:AnnotationProperty>


Expand Down Expand Up @@ -207,9 +206,7 @@ Uma Vempati, Hande Küçük, Ubbo Visser, Saminda Abeyruwan, Kunie Sakurai, Vanc
<!-- http://purl.obolibrary.org/obo/IAO_0100001 -->


<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0100001">
<rdfs:label>term replaced by</rdfs:label>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0100001"/>



Expand Down Expand Up @@ -286,7 +283,6 @@ Uma Vempati, Hande Küçük, Ubbo Visser, Saminda Abeyruwan, Kunie Sakurai, Vanc
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/hp#abbreviation">
<terms:creator rdf:resource="https://orcid.org/0000-0002-5316-1399"/>
<rdfs:label>abbreviation</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
</owl:AnnotationProperty>


Expand All @@ -307,7 +303,6 @@ Uma Vempati, Hande Küçük, Ubbo Visser, Saminda Abeyruwan, Kunie Sakurai, Vanc

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/hp#hposlim_core">
<rdfs:comment>Core clinical terminology</rdfs:comment>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>


Expand All @@ -318,7 +313,6 @@ Uma Vempati, Hande Küçük, Ubbo Visser, Saminda Abeyruwan, Kunie Sakurai, Vanc
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/hp#layperson">
<terms:creator rdf:resource="https://orcid.org/0000-0002-5316-1399"/>
<rdfs:label>layperson term</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
</owl:AnnotationProperty>


Expand All @@ -330,7 +324,6 @@ Uma Vempati, Hande Küçük, Ubbo Visser, Saminda Abeyruwan, Kunie Sakurai, Vanc
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2018-05-05T19:01:17Z</dc:date>
<terms:creator rdf:resource="https://orcid.org/0000-0002-0736-9199"/>
<rdfs:label>discarded/obsoleted synonym</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
</owl:AnnotationProperty>


Expand All @@ -341,7 +334,6 @@ Uma Vempati, Hande Küçük, Ubbo Visser, Saminda Abeyruwan, Kunie Sakurai, Vanc
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/hp#plural_form">
<terms:creator rdf:resource="https://orcid.org/0000-0002-5316-1399"/>
<rdfs:label>plural form</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
</owl:AnnotationProperty>


Expand All @@ -351,7 +343,6 @@ Uma Vempati, Hande Küçük, Ubbo Visser, Saminda Abeyruwan, Kunie Sakurai, Vanc

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/hp#secondary_consequence">
<rdfs:comment>Consequence of a disorder in another organ system.</rdfs:comment>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>


Expand All @@ -362,7 +353,6 @@ Uma Vempati, Hande Küçük, Ubbo Visser, Saminda Abeyruwan, Kunie Sakurai, Vanc
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/hp#uk_spelling">
<terms:creator rdf:resource="https://orcid.org/0000-0002-5316-1399"/>
<rdfs:label>UK spelling</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
</owl:AnnotationProperty>


Expand Down Expand Up @@ -514,9 +504,7 @@ Uma Vempati, Hande Küçük, Ubbo Visser, Saminda Abeyruwan, Kunie Sakurai, Vanc
<!-- http://www.geneontology.org/formats/oboInOwl#consider -->


<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#consider">
<rdfs:label>consider</rdfs:label>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#consider"/>



Expand Down Expand Up @@ -553,9 +541,7 @@ Uma Vempati, Hande Küçük, Ubbo Visser, Saminda Abeyruwan, Kunie Sakurai, Vanc
<!-- http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym -->


<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym">
<rdfs:label>has_broad_synonym</rdfs:label>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym"/>



Expand All @@ -571,18 +557,14 @@ Uma Vempati, Hande Küçük, Ubbo Visser, Saminda Abeyruwan, Kunie Sakurai, Vanc
<!-- http://www.geneontology.org/formats/oboInOwl#hasExactSynonym -->


<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym">
<rdfs:label>has_exact_synonym</rdfs:label>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>



<!-- http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym -->


<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym">
<rdfs:label>has_narrow_synonym</rdfs:label>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym"/>



Expand All @@ -605,9 +587,7 @@ Uma Vempati, Hande Küçük, Ubbo Visser, Saminda Abeyruwan, Kunie Sakurai, Vanc
<!-- http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym -->


<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym">
<rdfs:label>has_related_synonym</rdfs:label>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>



Expand Down Expand Up @@ -1549,9 +1529,6 @@ Uma Vempati, Hande Küçük, Ubbo Visser, Saminda Abeyruwan, Kunie Sakurai, Vanc
<rdf:Description rdf:about="http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion">
<rdfs:label>has_obo_format_version</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://www.geneontology.org/formats/oboInOwl#logical-definition-view-relation">
<rdfs:label>logical-definition-view-relation</rdfs:label>
</rdf:Description>
</rdf:RDF>


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2 changes: 1 addition & 1 deletion external-dev/bao-slim.owl
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Expand Up @@ -24,7 +24,7 @@
<dc:license rdf:resource="https://creativecommons.org/licenses/by-sa/4.0/"/>
<pav:importedFrom>http://bioassayontology.org/bao/bao_complete_merged.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-03-01 01:24:46</oboInOwl:date>
<oboInOwl:date>2024-03-21 13:09:11</oboInOwl:date>
<rdfs:comment>Contact:
Stephan Schurer
stephan dot schurer at gmail dot com</rdfs:comment>
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2 changes: 1 addition & 1 deletion external-dev/bfo-slim.owl
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Expand Up @@ -45,7 +45,7 @@
<dc:license rdf:resource="http://creativecommons.org/licenses/by/3.0/"/>
<pav:importedFrom>http://purl.obolibrary.org/obo/bfo/classes-only.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-03-01 01:24:48</oboInOwl:date>
<oboInOwl:date>2024-03-21 13:09:13</oboInOwl:date>
<rdfs:comment xml:lang="en">The http://purl.obolibary.org/obo/bfo/classes-only.owl variant of BFO (&quot;bfo_classes_only.owl&quot;) includes only the class hierarchy and annotations from the full OWL version of BFO 2: http://purl.obolibary.org/obo/bfo.owl (&quot;bfo.owl&quot;). There are no object properties or logical axioms that use the object properties in bfo_classes_only.owl. As the logical axioms in the bfo_classes_only.owl variant are limited to subclass and disjoint assertions they are much weaker than the logical axioms in bfo.owl.

If you plan to use the relations that define BFO 2, you should import bfo.owl instead of bfo_classes_only.owl. To the extent that the relations are used without importing bfo.owl, be mindful that they should be used in a manner consistent with their use in bfo.owl. Otherwise if your ontology is imported by a another ontology that imports bfo.owl there may be inconsistencies.
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2 changes: 1 addition & 1 deletion external-dev/bto-slim.owl
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Expand Up @@ -20,7 +20,7 @@
<pav:importedFrom>http://purl.obolibrary.org/obo/bto.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>OBO-Edit 2.3.1</oboInOwl:auto-generated-by>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-03-01 01:24:52</oboInOwl:date>
<oboInOwl:date>2024-03-21 13:09:18</oboInOwl:date>
<oboInOwl:date>23:10:2021 16:56</oboInOwl:date>
<oboInOwl:default-namespace>BrendaTissueOBO</oboInOwl:default-namespace>
<oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
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2 changes: 1 addition & 1 deletion external-dev/ccont-slim.owl
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Expand Up @@ -15,7 +15,7 @@
<pav:importedFrom>https://raw.githubusercontent.com/enanomapper/ontologies/master/internal/ccont-ext.owl</pav:importedFrom>
<efo:creator>Matthias Ganzinger, [email protected]</efo:creator>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-03-01 01:24:54</oboInOwl:date>
<oboInOwl:date>2024-03-21 13:09:19</oboInOwl:date>
<rdfs:label>cell culture ontology (CCONT)</rdfs:label>
<owl:versionInfo>1.1</owl:versionInfo>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
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6 changes: 3 additions & 3 deletions external-dev/chebi-slim.owl
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Expand Up @@ -17,13 +17,13 @@
<owl:Ontology rdf:about="http://purl.enanomapper.net/onto/external/chebi-slim.owl">
<pav:importedFrom>http://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi_lite.obo</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-03-01 01:26:35</oboInOwl:date>
<oboInOwl:date>29:01:2024 14:32</oboInOwl:date>
<oboInOwl:date>2024-03-21 13:10:53</oboInOwl:date>
<oboInOwl:date>27:02:2024 20:11</oboInOwl:date>
<oboInOwl:default-namespace>chebi_ontology</oboInOwl:default-namespace>
<oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
<oboInOwl:saved-by>chebi</oboInOwl:saved-by>
<rdfs:comment>Author: ChEBI curation team</rdfs:comment>
<rdfs:comment>ChEBI Release version 230</rdfs:comment>
<rdfs:comment>ChEBI Release version 231</rdfs:comment>
<rdfs:comment>ChEBI subsumes and replaces the Chemical Ontology first</rdfs:comment>
<rdfs:comment>For any queries contact [email protected]</rdfs:comment>
<rdfs:comment>developed by Michael Ashburner &amp; Pankaj Jaiswal.</rdfs:comment>
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2 changes: 1 addition & 1 deletion external-dev/cheminf-slim.owl
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Expand Up @@ -79,7 +79,7 @@
<terms:license>http://creativecommons.org/publicdomain/zero/1.0/</terms:license>
<pav:importedFrom>http://semanticchemistry.github.io/semanticchemistry/ontology/cheminf.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-03-01 01:24:56</oboInOwl:date>
<oboInOwl:date>2024-03-21 13:09:21</oboInOwl:date>
<rdfs:comment xml:lang="en">An information artifact is, loosely, a dependent continuant or its bearer that is created as the result of one or more intentional processes. Examples: uniprot, the english language, the contents of this document or a printout of it, the temperature measurements from a weather balloon. For more information, see the project home page at https://github.com/information-artifact-ontology/IAO</rdfs:comment>
<rdfs:comment>Document containing upporting external terms</rdfs:comment>
<rdfs:comment>IDs allocated to related efforts: PNO: IAO_0020000-IAO_0020999, D_ACTS: IAO_0021000-IAO_0021999</rdfs:comment>
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2 changes: 1 addition & 1 deletion external-dev/chmo-slim.owl
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Expand Up @@ -19,7 +19,7 @@
<terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
<pav:importedFrom>http://purl.obolibrary.org/obo/chmo.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-03-01 01:26:40</oboInOwl:date>
<oboInOwl:date>2024-03-21 13:10:57</oboInOwl:date>
<oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
<oboInOwl:saved-by>batchelorc</oboInOwl:saved-by>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
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2 changes: 1 addition & 1 deletion external-dev/clo-slim.owl
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Expand Up @@ -45,7 +45,7 @@
<terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
<pav:importedFrom>http://purl.obolibrary.org/obo/cl.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-03-01 01:26:52</oboInOwl:date>
<oboInOwl:date>2024-03-21 13:11:09</oboInOwl:date>
<rdfs:comment>See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, [email protected], University at Buffalo.</rdfs:comment>
<owl:versionInfo>2024-02-13</owl:versionInfo>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
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39 changes: 3 additions & 36 deletions external-dev/efo-slim.owl
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Expand Up @@ -55,9 +55,9 @@ License. </dc:rights>
<terms:license>www.apache.org/licenses/LICENSE-2.0</terms:license>
<pav:importedFrom>http://www.ebi.ac.uk/efo/efo.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-03-01 01:27:37</oboInOwl:date>
<rdfs:comment>2024-02-15</rdfs:comment>
<owl:versionInfo>3.63.0</owl:versionInfo>
<oboInOwl:date>2024-03-21 13:12:09</oboInOwl:date>
<rdfs:comment>2024-03-18</rdfs:comment>
<owl:versionInfo>3.64.0</owl:versionInfo>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
</owl:Ontology>

Expand Down Expand Up @@ -21058,25 +21058,6 @@ Buil et al, 2010 propose that C4BP may be a susceptibility locus for venous thro



<!-- http://www.ebi.ac.uk/efo/EFO_0004624 -->


<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0004624">
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0004747"/>
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0005127"/>
<obo:IAO_0000115>A PSA measurement is the quantification of prostate specific antigen typically in blood used in the diagnosis of prostate cancer.</obo:IAO_0000115>
<obo:IAO_0000117>Helen Parkinson</obo:IAO_0000117>
<efo:gwas_trait rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</efo:gwas_trait>
<oboInOwl:hasDbXref>NCIt:C17634</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>SNOMEDCT:63476009</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym>PSA levels</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>PSA measurement</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>prostate specific antigen levels</oboInOwl:hasExactSynonym>
<rdfs:label>prostate specific antigen measurement</rdfs:label>
</owl:Class>



<!-- http://www.ebi.ac.uk/efo/EFO_0004625 -->


Expand Down Expand Up @@ -70803,20 +70784,6 @@ of diseased coronary vessels at the time of a catheterization procedure. The var



<!-- http://www.ebi.ac.uk/efo/EFO_0020660 -->


<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0020660">
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0004747"/>
<obo:IAO_0000115>The determination of the amount of prostate-specific antigen in a sample</obo:IAO_0000115>
<obo:IAO_0000117>Annalisa Buniello</obo:IAO_0000117>
<efo:gwas_trait rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</efo:gwas_trait>
<oboInOwl:hasDbXref>PMID:28240269</oboInOwl:hasDbXref>
<rdfs:label>prostate-specific antigen measurement</rdfs:label>
</owl:Class>



<!-- http://www.ebi.ac.uk/efo/EFO_0020661 -->


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2 changes: 1 addition & 1 deletion external-dev/envo-slim.owl
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Expand Up @@ -35,7 +35,7 @@
<doap:GitRepository rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/EnvironmentOntology/envo/</doap:GitRepository>
<doap:bug-database rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/EnvironmentOntology/envo/issues/</doap:bug-database>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-03-01 01:27:44</oboInOwl:date>
<oboInOwl:date>2024-03-21 13:12:16</oboInOwl:date>
<oboInOwl:default-namespace>ENVO</oboInOwl:default-namespace>
<rdfs:comment>Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/envo/modules/chemical_concentration.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 679 Logical Axioms: 119]</rdfs:comment>
<rdfs:comment>Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/envo/modules/entity_attribute.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 206 Logical Axioms: 34]</rdfs:comment>
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