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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -3,7 +3,7 @@ on: | |
| workflow_dispatch: | ||
| pull_request: | ||
| paths: | ||
| - './config/*' | ||
| - 'config/*' | ||
| push: | ||
| paths: | ||
| - 'config.yaml' | ||
|
|
@@ -53,7 +53,6 @@ jobs: | |
| run: wget ${{ env.slimmer }} | ||
| - name: get robot | ||
| run: | | ||
| cd ./scripts/src/build-workflow | ||
| wget ${{ env.robot }} | ||
| wget ${{ env.robot_jar}} | ||
|
|
@@ -206,21 +205,23 @@ jobs: | |
| run: bash scripts/src/build-workflow/props.sh ro | ||
| # Commit and push | ||
| - name: Commit OWL files | ||
| if: always() | ||
| run: | | ||
| if [[ "${{ github.ref_name }}" == *"merge"* ]]; then | ||
| exit 0 | ||
| fi | ||
| git checkout "${{ github.ref_name }}" | ||
| git pull | ||
| git add external-dev/*.owl | ||
| git add -f external-dev/*.owl | ||
| git config --local user.email "[email protected]" | ||
| git config --local user.name "GitHub Action" | ||
| git config --local user.name "Slimmer bot" | ||
| # Check if there are changes to commit | ||
| if git diff-index --quiet HEAD --; then | ||
| echo "No changes to commit." | ||
| else | ||
| git commit -m "Actions - slim updated" ./external-dev/*.owl || true | ||
| fi | ||
| # Check if there are changes to push | ||
| if [[ $(git rev-parse --abbrev-ref HEAD) == "master" ]]; then | ||
| if [[ $(git rev-parse --abbrev-ref HEAD) == "${{ github.ref_name }}" ]]; then | ||
| if [ -n "$(git cherry -v)" ]; then | ||
| git push || echo "Push failed." | ||
| else | ||
|
|
||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,32 @@ | ||
| name: Suggest IRI upon term request | ||
| concurrency: | ||
| group: ${{ github.workflow }}-${{ github.ref }} | ||
| cancel-in-progress: false | ||
| on: | ||
| issues: | ||
| types: | ||
| - labeled | ||
| jobs: | ||
| add-comment: | ||
| if: github.event.label.name == 'term request' | ||
| runs-on: ubuntu-latest | ||
| permissions: | ||
| issues: write | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
|
|
||
|
|
||
| - name: generate IRI | ||
| run: | | ||
| new_iri=$(bash scripts/src/generate_iri.sh) | ||
| echo "NEW_IRI=$new_iri" >> $GITHUB_ENV | ||
| echo $new_iri | ||
| - name: Add comment | ||
| run: gh issue comment "$NUMBER" --body "$BODY" | ||
| env: | ||
| GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| GH_REPO: ${{ github.repository }} | ||
| NUMBER: ${{ github.event.issue.number }} | ||
| BODY: > | ||
| **Available IRI**: ${{ env.NEW_IRI }} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1 +1,13 @@ | ||
| http://www.bioassayontology.org/bao#BAO_0000209 | ||
| http://www.bioassayontology.org/bao#BAO_0000209 | ||
| http://www.bioassayontology.org/bao#BAO_0002833 | ||
| http://www.bioassayontology.org/bao#BAO_0002921 | ||
| http://www.bioassayontology.org/bao#BAO_0000208 | ||
| http://www.bioassayontology.org/bao#BAO_0002669 | ||
| http://www.bioassayontology.org/bao#BAO_0002668 | ||
| http://www.bioassayontology.org/bao#BAO_0000182 | ||
| http://www.bioassayontology.org/bao#BAO_0000108 | ||
| http://www.bioassayontology.org/bao#BAO_0002666 | ||
| http://www.bioassayontology.org/bao#BAO_0000183 | ||
| http://www.bioassayontology.org/bao#BAO_0000335 | ||
| http://www.bioassayontology.org/bao#BAO_0090006 | ||
| http://www.bioassayontology.org/bao#BAO_0095013 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,13 +1,21 @@ | ||
| +(http://purl.obolibrary.org/obo/CL_0000003):http://purl.obolibrary.org/obo/BTO_0003151 HPAEC cell | ||
| +(http://purl.obolibrary.org/obo/CL_0000003):http://purl.obolibrary.org/obo/BTO_0002900 monocyte-derived dendritic cell | ||
| +(http://purl.obolibrary.org/obo/CL_0000003):http://purl.obolibrary.org/obo/BTO_0001025 peripheral blood mononuclear cell | ||
| +(http://purl.obolibrary.org/obo/CL_0000003):http://purl.obolibrary.org/obo/BTO_0002922 bronchial epithelial cell | ||
| +(http://purl.obolibrary.org/obo/CL_0000003):http://purl.obolibrary.org/obo/BTO_0001141 pulmonary artery endothelial cell | ||
| +(http://purl.obolibrary.org/obo/CL_0000003):http://purl.obolibrary.org/obo/BTO_0004602 human aortic endothelial cell | ||
| +(http://purl.obolibrary.org/obo/CL_0000010):http://purl.obolibrary.org/obo/BTO_0003151 HPAEC cell | ||
| +D(http://purl.obolibrary.org/obo/CL_0000010):http://purl.obolibrary.org/obo/BTO_0002042 dendritic cell | ||
| +(http://purl.obolibrary.org/obo/CL_0000010):http://purl.obolibrary.org/obo/BTO_0001025 peripheral blood mononuclear cell | ||
| +(http://purl.obolibrary.org/obo/CL_0000010):http://purl.obolibrary.org/obo/BTO_0002922 bronchial epithelial cell | ||
| +(http://purl.obolibrary.org/obo/CL_0000010):http://purl.obolibrary.org/obo/BTO_0001141 pulmonary artery endothelial cell | ||
| +(http://purl.obolibrary.org/obo/CL_0000010):http://purl.obolibrary.org/obo/BTO_0004602 human aortic endothelial cell | ||
| +(http://purl.obolibrary.org/obo/UBERON_0000062):http://purl.obolibrary.org/obo/BTO_0000763 lung | ||
| +(http://purl.obolibrary.org/obo/UBERON_0000062):http://purl.obolibrary.org/obo/BTO_0001279 spinal cord | ||
| +(http://purl.obolibrary.org/obo/UBERON_0000062):http://purl.obolibrary.org/obo/BTO_0000269 colon | ||
| +(http://purl.obolibrary.org/obo/UBERON_0000062):http://purl.obolibrary.org/obo/BTO_0000341 diaphragm | ||
| +(http://purl.obolibrary.org/obo/UBERON_0000062):http://purl.obolibrary.org/obo/BTO_0000759 liver | ||
| +(http://www.ebi.ac.uk/efo/EFO_0002888):http://purl.obolibrary.org/obo/BTO_0004433 HET-1A cell line | ||
| +(http://www.ebi.ac.uk/efo/EFO_0002888):http://www.ebi.ac.uk/efo/EFO_0002888 liver cell line | ||
| +(http://www.ebi.ac.uk/efo/EFO_0002009):http://purl.obolibrary.org/obo/BTO_0001619 Human dermal fibroblast | ||
| +(http://www.ebi.ac.uk/efo/EFO_0002888):http://purl.obolibrary.org/obo/BTO_0001619 Human dermal fibroblast | ||
| +(http://purl.enanomapper.net/onto/ENM_0617835):http://purl.obolibrary.org/obo/BTO_0000745 Lewis lung carcinoma cell LLC | ||
| +(http://purl.obolibrary.org/obo/BTO_0002278):http://purl.obolibrary.org/obo/BTO_0001034 PMO macrophage | ||
| +(http://www.ebi.ac.uk/efo/EFO_0002009):http://purl.obolibrary.org/obo/BTO_0000331 L929 | ||
| +(http://www.ebi.ac.uk/efo/EFO_0002887):http://purl.obolibrary.org/obo/BTO_0000331 L929 | ||
| +(http://www.ebi.ac.uk/efo/EFO_0002887):http://purl.obolibrary.org/obo/BTO_0001957 MC3T3 | ||
| +(http://www.ebi.ac.uk/efo/EFO_0002009):http://purl.obolibrary.org/obo/BTO_0001957 MC3T3 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,3 +1,23 @@ | ||
| +(http://purl.obolibrary.org/obo/OBI_0000070):http://purl.obolibrary.org/obo/GO_0009293 transduction | ||
| +(http://purl.obolibrary.org/obo/OBI_0000070):http://purl.obolibrary.org/obo/GO_0050663 cytokine secretion | ||
| +(http://purl.obolibrary.org/obo/BFO_0000034):http://purl.obolibrary.org/obo/GO_0003824 catalytic activity | ||
| +(http://purl.obolibrary.org/obo/BFO_0000034):http://purl.obolibrary.org/obo/GO_0003824 catalytic activity | ||
| +(http://purl.obolibrary.org/obo/BFO_0000015):http://purl.obolibrary.org/obo/GO_0008150 biological process | ||
| +(http://purl.obolibrary.org/obo/GO_0008150):http://purl.obolibrary.org/obo/GO_0009987 cellular process | ||
| +(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_0006914 autophagy | ||
| +D(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_0043281 regulation of cysteine-type endopeptidase activity involved in apoptotic process | ||
| +(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_0098739 import across plasma membrane | ||
| +(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_0032060 formation of blebs | ||
| +(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_1903786 regulation GSH | ||
| +(http://purl.obolibrary.org/obo/GO_0098739):http://purl.obolibrary.org/obo/GO_0097553 calcium import across membrane | ||
| +D(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_0061136 regulation of proteasomal protein catabolic process | ||
| +D(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_1905165 regulation of lysosomal protein catabolic process | ||
| +D(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_1903786 regulation of glutathione biosynthetic process | ||
| +D(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_1902806 regulation of cell cycle G1/S phase transition | ||
| +D(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_0051493 regulation of cytoskeleton organization | ||
| +D(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_0141085 regulation of inflammasome-mediated signaling pathway | ||
| +(http://purl.obolibrary.org/obo/GO_0003824):http://purl.obolibrary.org/obo/GO_0016175 superoxide-generating NAD(P)H oxidase activity | ||
| +D(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO:0016192 vesicle-mediated transport | ||
| +D(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_0002433 immune response-regulating cell surface receptor signaling pathway involved in phagocytosis | ||
| +(http://purl.obolibrary.org/obo/GO_0003824):http://purl.obolibrary.org/obo/GO_0004457 lactate dehydrogenase activity | ||
| +(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_0070527 platelet aggregation | ||
| +D(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_0034121 regulation of TLR pathway |
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