Actions - slim updated

enanomapper · Dec 1, 2023 · b4ded98 · b4ded98
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commit b4ded98
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Showing 24 changed files with 96 additions and 124 deletions.
diff --git a/external-dev/aopo-slim.owl b/external-dev/aopo-slim.owl
@@ -43,15 +43,15 @@
         <terms:license rdf:resource="https://hpo.jax.org/app/license"/>
         <pav:importedFrom>https://raw.githubusercontent.com/jmillanacosta/aop-ontology/patch-1/aopo.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2023-11-01 01:23:34</oboInOwl:date>
-        <oboInOwl:date>27:09:2023 19:34</oboInOwl:date>
+        <oboInOwl:date>2023-12-01 01:36:46</oboInOwl:date>
+        <oboInOwl:date>27:10:2023 19:30</oboInOwl:date>
         <oboInOwl:default-namespace>chebi_ontology</oboInOwl:default-namespace>
         <oboInOwl:default-namespace>human_phenotype</oboInOwl:default-namespace>
         <oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
         <oboInOwl:logical-definition-view-relation>has_part</oboInOwl:logical-definition-view-relation>
         <oboInOwl:saved-by>chebi</oboInOwl:saved-by>
         <rdfs:comment>Author: ChEBI curation team</rdfs:comment>
-        <rdfs:comment>ChEBI Release version 226</rdfs:comment>
+        <rdfs:comment>ChEBI Release version 227</rdfs:comment>
         <rdfs:comment>ChEBI subsumes and replaces the Chemical Ontology first</rdfs:comment>
         <rdfs:comment>Contact:
 Stephan Schurer

diff --git a/external-dev/bao-slim.owl b/external-dev/bao-slim.owl
@@ -24,7 +24,7 @@
         <dc:license rdf:resource="https://creativecommons.org/licenses/by-sa/4.0/"/>
         <pav:importedFrom>http://bioassayontology.org/bao/bao_complete_merged.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2023-11-01 01:23:43</oboInOwl:date>
+        <oboInOwl:date>2023-12-01 01:36:53</oboInOwl:date>
         <rdfs:comment>Contact:
 Stephan Schurer
 stephan dot schurer at gmail dot com</rdfs:comment>

diff --git a/external-dev/bfo-slim.owl b/external-dev/bfo-slim.owl
@@ -45,7 +45,7 @@
         <dc:license rdf:resource="http://creativecommons.org/licenses/by/3.0/"/>
         <pav:importedFrom>http://purl.obolibrary.org/obo/bfo/classes-only.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2023-11-01 01:23:45</oboInOwl:date>
+        <oboInOwl:date>2023-12-01 01:36:56</oboInOwl:date>
         <rdfs:comment xml:lang="en">The http://purl.obolibary.org/obo/bfo/classes-only.owl variant of BFO (&quot;bfo_classes_only.owl&quot;) includes only the class hierarchy and annotations from the full OWL version of BFO 2: http://purl.obolibary.org/obo/bfo.owl (&quot;bfo.owl&quot;). There are no object properties or logical axioms that use the object properties in bfo_classes_only.owl. As the logical axioms in the bfo_classes_only.owl variant are limited to subclass and disjoint assertions they are much weaker than the logical axioms in bfo.owl.
 
 If you plan to use the relations that define BFO 2, you should import bfo.owl instead of bfo_classes_only.owl. To the extent that the relations are used without importing bfo.owl, be mindful that they should be used in a manner consistent with their use in bfo.owl. Otherwise if your ontology is imported by a another ontology that imports bfo.owl there may be inconsistencies. 

diff --git a/external-dev/bto-slim.owl b/external-dev/bto-slim.owl
@@ -20,7 +20,7 @@
         <pav:importedFrom>http://purl.obolibrary.org/obo/bto.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>OBO-Edit 2.3.1</oboInOwl:auto-generated-by>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2023-11-01 01:23:49</oboInOwl:date>
+        <oboInOwl:date>2023-12-01 01:37:02</oboInOwl:date>
         <oboInOwl:date>23:10:2021 16:56</oboInOwl:date>
         <oboInOwl:default-namespace>BrendaTissueOBO</oboInOwl:default-namespace>
         <oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>

diff --git a/external-dev/ccont-slim.owl b/external-dev/ccont-slim.owl
@@ -15,7 +15,7 @@
         <pav:importedFrom>https://raw.githubusercontent.com/enanomapper/ontologies/master/internal/ccont-ext.owl</pav:importedFrom>
         <efo:creator>Matthias Ganzinger, [email protected]</efo:creator>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2023-11-01 01:23:50</oboInOwl:date>
+        <oboInOwl:date>2023-12-01 01:37:03</oboInOwl:date>
         <rdfs:label>cell culture ontology (CCONT)</rdfs:label>
         <owl:versionInfo>1.1</owl:versionInfo>
         <owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>

diff --git a/external-dev/chebi-slim.owl b/external-dev/chebi-slim.owl
@@ -17,13 +17,13 @@
     <owl:Ontology rdf:about="http://purl.enanomapper.net/onto/external/chebi-slim.owl">
         <pav:importedFrom>http://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi_lite.obo</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2023-11-01 01:24:26</oboInOwl:date>
-        <oboInOwl:date>27:09:2023 19:34</oboInOwl:date>
+        <oboInOwl:date>2023-12-01 01:39:05</oboInOwl:date>
+        <oboInOwl:date>27:10:2023 19:30</oboInOwl:date>
         <oboInOwl:default-namespace>chebi_ontology</oboInOwl:default-namespace>
         <oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
         <oboInOwl:saved-by>chebi</oboInOwl:saved-by>
         <rdfs:comment>Author: ChEBI curation team</rdfs:comment>
-        <rdfs:comment>ChEBI Release version 226</rdfs:comment>
+        <rdfs:comment>ChEBI Release version 227</rdfs:comment>
         <rdfs:comment>ChEBI subsumes and replaces the Chemical Ontology first</rdfs:comment>
         <rdfs:comment>For any queries contact [email protected]</rdfs:comment>
         <rdfs:comment>developed by Michael Ashburner &amp; Pankaj Jaiswal.</rdfs:comment>
@@ -1215,6 +1215,20 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/CHEBI_197449 -->
+
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_197449">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_46787"/>
+        <obo:IAO_0000115>A solvent used in nuclear magnetic resonance (NMR) spectroscopy.</obo:IAO_0000115>
+        <oboInOwl:hasOBONamespace>chebi_ontology</oboInOwl:hasOBONamespace>
+        <oboInOwl:id>CHEBI:197449</oboInOwl:id>
+        <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/chebi#3_STAR"/>
+        <rdfs:label>NMR solvent</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- http://purl.obolibrary.org/obo/CHEBI_22153 -->
 
 
@@ -8183,6 +8197,7 @@
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_90710">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_23888"/>
         <obo:IAO_0000115>A drug that acts as an antagonist, agonist, reverse agonist, or in some other fashion when interacting with cellular receptors.</obo:IAO_0000115>
+        <oboInOwl:hasAlternativeId>CHEBI:189678</oboInOwl:hasAlternativeId>
         <oboInOwl:hasOBONamespace>chebi_ontology</oboInOwl:hasOBONamespace>
         <oboInOwl:id>CHEBI:90710</oboInOwl:id>
         <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/chebi#3_STAR"/>

diff --git a/external-dev/cheminf-slim.owl b/external-dev/cheminf-slim.owl
@@ -79,7 +79,7 @@
         <terms:license>http://creativecommons.org/publicdomain/zero/1.0/</terms:license>
         <pav:importedFrom>http://semanticchemistry.github.io/semanticchemistry/ontology/cheminf.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2023-11-01 01:23:53</oboInOwl:date>
+        <oboInOwl:date>2023-12-01 01:37:07</oboInOwl:date>
         <rdfs:comment xml:lang="en">An information artifact is, loosely, a dependent continuant or its bearer that is created as the result of one or more intentional processes. Examples: uniprot, the english language, the contents of this document or a printout of it, the temperature measurements from a weather balloon. For more information, see the project home page at https://github.com/information-artifact-ontology/IAO</rdfs:comment>
         <rdfs:comment>Document containing upporting external terms</rdfs:comment>
         <rdfs:comment>IDs allocated to related efforts: PNO: IAO_0020000-IAO_0020999, D_ACTS: IAO_0021000-IAO_0021999</rdfs:comment>

diff --git a/external-dev/chmo-slim.owl b/external-dev/chmo-slim.owl
@@ -19,7 +19,7 @@
         <terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
         <pav:importedFrom>http://purl.obolibrary.org/obo/chmo.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2023-11-01 01:24:30</oboInOwl:date>
+        <oboInOwl:date>2023-12-01 01:39:11</oboInOwl:date>
         <oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
         <oboInOwl:saved-by>batchelorc</oboInOwl:saved-by>
         <owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>

diff --git a/external-dev/clo-slim.owl b/external-dev/clo-slim.owl
@@ -44,7 +44,7 @@
         <terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
         <pav:importedFrom>http://purl.obolibrary.org/obo/cl.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2023-11-01 01:24:41</oboInOwl:date>
+        <oboInOwl:date>2023-12-01 01:39:23</oboInOwl:date>
         <rdfs:comment>See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, [email protected], University at Buffalo.</rdfs:comment>
         <owl:versionInfo>2023-10-19</owl:versionInfo>
         <owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>