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Actions - slim updated
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actions-user committed Feb 1, 2024
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15 changes: 11 additions & 4 deletions external-dev/aopo-slim.owl
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<terms:license rdf:resource="https://hpo.jax.org/app/license"/>
<pav:importedFrom>https://raw.githubusercontent.com/jmillanacosta/aop-ontology/patch-1/aopo.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>07:12:2023 17:27</oboInOwl:date>
<oboInOwl:date>2024-01-01 01:36:43</oboInOwl:date>
<oboInOwl:date>04:01:2024 19:44</oboInOwl:date>
<oboInOwl:date>2024-02-01 01:22:53</oboInOwl:date>
<oboInOwl:default-namespace>chebi_ontology</oboInOwl:default-namespace>
<oboInOwl:default-namespace>human_phenotype</oboInOwl:default-namespace>
<oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
<oboInOwl:logical-definition-view-relation>has_part</oboInOwl:logical-definition-view-relation>
<oboInOwl:saved-by>chebi</oboInOwl:saved-by>
<rdfs:comment>Author: ChEBI curation team</rdfs:comment>
<rdfs:comment>ChEBI Release version 227</rdfs:comment>
<rdfs:comment>ChEBI Release version 228</rdfs:comment>
<rdfs:comment>ChEBI subsumes and replaces the Chemical Ontology first</rdfs:comment>
<rdfs:comment>Contact:
Stephan Schurer
Expand Down Expand Up @@ -98,7 +98,7 @@ Uma Vempati, Hande Küçük, Ubbo Visser, Saminda Abeyruwan, Kunie Sakurai, Vanc
<owl:versionInfo>2.8.6</owl:versionInfo>
<owl:versionInfo>2.8.8</owl:versionInfo>
<owl:versionInfo>2.8.9</owl:versionInfo>
<owl:versionInfo>2023-10-09</owl:versionInfo>
<owl:versionInfo>2024-01-16</owl:versionInfo>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
</owl:Ontology>

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<!-- http://purl.obolibrary.org/obo/IAO_0000233 -->


<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000233"/>



<!-- http://purl.obolibrary.org/obo/IAO_0000700 -->


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2 changes: 1 addition & 1 deletion external-dev/bao-slim.owl
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<dc:license rdf:resource="https://creativecommons.org/licenses/by-sa/4.0/"/>
<pav:importedFrom>http://bioassayontology.org/bao/bao_complete_merged.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-01-01 01:36:51</oboInOwl:date>
<oboInOwl:date>2024-02-01 01:23:02</oboInOwl:date>
<rdfs:comment>Contact:
Stephan Schurer
stephan dot schurer at gmail dot com</rdfs:comment>
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2 changes: 1 addition & 1 deletion external-dev/bfo-slim.owl
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Expand Up @@ -45,7 +45,7 @@
<dc:license rdf:resource="http://creativecommons.org/licenses/by/3.0/"/>
<pav:importedFrom>http://purl.obolibrary.org/obo/bfo/classes-only.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-01-01 01:36:53</oboInOwl:date>
<oboInOwl:date>2024-02-01 01:23:03</oboInOwl:date>
<rdfs:comment xml:lang="en">The http://purl.obolibary.org/obo/bfo/classes-only.owl variant of BFO (&quot;bfo_classes_only.owl&quot;) includes only the class hierarchy and annotations from the full OWL version of BFO 2: http://purl.obolibary.org/obo/bfo.owl (&quot;bfo.owl&quot;). There are no object properties or logical axioms that use the object properties in bfo_classes_only.owl. As the logical axioms in the bfo_classes_only.owl variant are limited to subclass and disjoint assertions they are much weaker than the logical axioms in bfo.owl.

If you plan to use the relations that define BFO 2, you should import bfo.owl instead of bfo_classes_only.owl. To the extent that the relations are used without importing bfo.owl, be mindful that they should be used in a manner consistent with their use in bfo.owl. Otherwise if your ontology is imported by a another ontology that imports bfo.owl there may be inconsistencies.
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2 changes: 1 addition & 1 deletion external-dev/bto-slim.owl
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Expand Up @@ -20,7 +20,7 @@
<pav:importedFrom>http://purl.obolibrary.org/obo/bto.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>OBO-Edit 2.3.1</oboInOwl:auto-generated-by>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-01-01 01:36:59</oboInOwl:date>
<oboInOwl:date>2024-02-01 01:23:08</oboInOwl:date>
<oboInOwl:date>23:10:2021 16:56</oboInOwl:date>
<oboInOwl:default-namespace>BrendaTissueOBO</oboInOwl:default-namespace>
<oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
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2 changes: 1 addition & 1 deletion external-dev/ccont-slim.owl
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Expand Up @@ -15,7 +15,7 @@
<pav:importedFrom>https://raw.githubusercontent.com/enanomapper/ontologies/master/internal/ccont-ext.owl</pav:importedFrom>
<efo:creator>Matthias Ganzinger, [email protected]</efo:creator>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-01-01 01:37:00</oboInOwl:date>
<oboInOwl:date>2024-02-01 01:23:09</oboInOwl:date>
<rdfs:label>cell culture ontology (CCONT)</rdfs:label>
<owl:versionInfo>1.1</owl:versionInfo>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
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20 changes: 17 additions & 3 deletions external-dev/chebi-slim.owl
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Expand Up @@ -17,13 +17,13 @@
<owl:Ontology rdf:about="http://purl.enanomapper.net/onto/external/chebi-slim.owl">
<pav:importedFrom>http://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi_lite.obo</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>07:12:2023 17:27</oboInOwl:date>
<oboInOwl:date>2024-01-01 01:39:17</oboInOwl:date>
<oboInOwl:date>04:01:2024 19:44</oboInOwl:date>
<oboInOwl:date>2024-02-01 01:24:45</oboInOwl:date>
<oboInOwl:default-namespace>chebi_ontology</oboInOwl:default-namespace>
<oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
<oboInOwl:saved-by>chebi</oboInOwl:saved-by>
<rdfs:comment>Author: ChEBI curation team</rdfs:comment>
<rdfs:comment>ChEBI Release version 227</rdfs:comment>
<rdfs:comment>ChEBI Release version 228</rdfs:comment>
<rdfs:comment>ChEBI subsumes and replaces the Chemical Ontology first</rdfs:comment>
<rdfs:comment>For any queries contact [email protected]</rdfs:comment>
<rdfs:comment>developed by Michael Ashburner &amp; Pankaj Jaiswal.</rdfs:comment>
Expand Down Expand Up @@ -1314,6 +1314,20 @@



<!-- http://purl.obolibrary.org/obo/CHEBI_228364 -->


<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_228364">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_33232"/>
<obo:IAO_0000115>The compound producing the peak used to reference an NMR spectrum during data pre-processing</obo:IAO_0000115>
<oboInOwl:hasOBONamespace>chebi_ontology</oboInOwl:hasOBONamespace>
<oboInOwl:id>CHEBI:228364</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/chebi#2_STAR"/>
<rdfs:label>NMR chemical shift reference compound</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/CHEBI_22917 -->


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2 changes: 1 addition & 1 deletion external-dev/cheminf-slim.owl
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Expand Up @@ -79,7 +79,7 @@
<terms:license>http://creativecommons.org/publicdomain/zero/1.0/</terms:license>
<pav:importedFrom>http://semanticchemistry.github.io/semanticchemistry/ontology/cheminf.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-01-01 01:37:05</oboInOwl:date>
<oboInOwl:date>2024-02-01 01:23:12</oboInOwl:date>
<rdfs:comment xml:lang="en">An information artifact is, loosely, a dependent continuant or its bearer that is created as the result of one or more intentional processes. Examples: uniprot, the english language, the contents of this document or a printout of it, the temperature measurements from a weather balloon. For more information, see the project home page at https://github.com/information-artifact-ontology/IAO</rdfs:comment>
<rdfs:comment>Document containing upporting external terms</rdfs:comment>
<rdfs:comment>IDs allocated to related efforts: PNO: IAO_0020000-IAO_0020999, D_ACTS: IAO_0021000-IAO_0021999</rdfs:comment>
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2 changes: 1 addition & 1 deletion external-dev/chmo-slim.owl
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Expand Up @@ -19,7 +19,7 @@
<terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
<pav:importedFrom>http://purl.obolibrary.org/obo/chmo.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-01-01 01:39:23</oboInOwl:date>
<oboInOwl:date>2024-02-01 01:24:50</oboInOwl:date>
<oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
<oboInOwl:saved-by>batchelorc</oboInOwl:saved-by>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
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22 changes: 11 additions & 11 deletions external-dev/clo-slim.owl
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Expand Up @@ -44,9 +44,9 @@
<terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
<pav:importedFrom>http://purl.obolibrary.org/obo/cl.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-01-01 01:39:35</oboInOwl:date>
<oboInOwl:date>2024-02-01 01:25:02</oboInOwl:date>
<rdfs:comment>See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, [email protected], University at Buffalo.</rdfs:comment>
<owl:versionInfo>2023-12-05</owl:versionInfo>
<owl:versionInfo>2024-01-04</owl:versionInfo>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
</owl:Ontology>

Expand Down Expand Up @@ -342,6 +342,15 @@ Annotations: IAO_0000424 &quot;http://purl.obolibrary.org/obo/BFO_0000051 some (



<!-- http://purl.obolibrary.org/obo/OMO_0003003 -->


<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OMO_0003003">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
</owl:AnnotationProperty>



<!-- http://purl.obolibrary.org/obo/OMO_0003004 -->


Expand Down Expand Up @@ -978,15 +987,6 @@ WHERE {



<!-- http://purl.obolibrary.org/obo/ncbitaxon#common_name -->


<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/ncbitaxon#common_name">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
</owl:AnnotationProperty>



<!-- http://purl.obolibrary.org/obo/ncbitaxon#equivalent_name -->


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19 changes: 16 additions & 3 deletions external-dev/efo-slim.owl
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Expand Up @@ -54,9 +54,9 @@ License. </dc:rights>
<terms:license>www.apache.org/licenses/LICENSE-2.0</terms:license>
<pav:importedFrom>http://www.ebi.ac.uk/efo/efo.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-01-01 01:40:41</oboInOwl:date>
<rdfs:comment>2023-12-18</rdfs:comment>
<owl:versionInfo>3.61.0</owl:versionInfo>
<oboInOwl:date>2024-02-01 01:25:43</oboInOwl:date>
<rdfs:comment>2024-01-15</rdfs:comment>
<owl:versionInfo>3.62.0</owl:versionInfo>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
</owl:Ontology>

Expand Down Expand Up @@ -8491,6 +8491,19 @@ Established melanoma cell line from the Skin Cancer Unit at the German Cancer Re



<!-- http://purl.obolibrary.org/obo/OBA_2050355 -->


<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBA_2050355">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBA_2020000"/>
<obo:IAO_0000115>The age at which diverticulitis manifestations first appear.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>age at onset of diverticulitis</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>age diverticulitis symptoms begin</oboInOwl:hasExactSynonym>
<rdfs:label>age of onset of diverticulitis</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/OBI_0001620 -->


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2 changes: 1 addition & 1 deletion external-dev/envo-slim.owl
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Expand Up @@ -35,7 +35,7 @@
<doap:GitRepository rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/EnvironmentOntology/envo/</doap:GitRepository>
<doap:bug-database rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/EnvironmentOntology/envo/issues/</doap:bug-database>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-01-01 01:40:48</oboInOwl:date>
<oboInOwl:date>2024-02-01 01:25:50</oboInOwl:date>
<oboInOwl:default-namespace>ENVO</oboInOwl:default-namespace>
<rdfs:comment>Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/envo/modules/chemical_concentration.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 679 Logical Axioms: 119]</rdfs:comment>
<rdfs:comment>Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/envo/modules/entity_attribute.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 206 Logical Axioms: 34]</rdfs:comment>
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2 changes: 1 addition & 1 deletion external-dev/fabio-slim.owl
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Expand Up @@ -33,7 +33,7 @@ FaBiO classes are structured according to the FRBR schema of Works, Expressions,
<vann:preferredNamespacePrefix>fabio</vann:preferredNamespacePrefix>
<vann:preferredNamespaceUri rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.org/spar/fabio/</vann:preferredNamespaceUri>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-01-01 01:40:52</oboInOwl:date>
<oboInOwl:date>2024-02-01 01:25:54</oboInOwl:date>
<rdfs:comment>FaBiO, the FRBR-aligned Bibliographic Ontology, is an ontology for recording and publishing on the Semantic Web bibliographic records of scholarly endeavours. It forms part of SPAR, a suite of Semantic Publishing and Referencing Ontologies. Other SPAR ontologies are described at http://purl.org/spar/.

This ontology is available at http://purl.org/spar/fabio, and uses the namespace prefix fabio.</rdfs:comment>
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24 changes: 12 additions & 12 deletions external-dev/go-slim.owl
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Expand Up @@ -24,10 +24,10 @@
<terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
<pav:importedFrom>http://purl.obolibrary.org/obo/go.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-01-01 01:41:14</oboInOwl:date>
<oboInOwl:date>2024-02-01 01:26:16</oboInOwl:date>
<oboInOwl:default-namespace>gene_ontology</oboInOwl:default-namespace>
<oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
<owl:versionInfo>2023-11-15</owl:versionInfo>
<owl:versionInfo>2024-01-17</owl:versionInfo>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
</owl:Ontology>

Expand Down Expand Up @@ -270,6 +270,16 @@



<!-- http://purl.obolibrary.org/obo/go#goslim_prokaryote -->


<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/go#goslim_prokaryote">
<rdfs:comment>GO subset for prokaryotes</rdfs:comment>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>



<!-- http://purl.obolibrary.org/obo/go#goslim_synapse -->


Expand Down Expand Up @@ -297,16 +307,6 @@



<!-- http://purl.obolibrary.org/obo/go#prokaryote_subset -->


<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/go#prokaryote_subset">
<rdfs:comment>GO subset for prokaryotes</rdfs:comment>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>



<!-- http://purl.obolibrary.org/obo/go#seeAlso -->


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2 changes: 1 addition & 1 deletion external-dev/iao-slim.owl
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Expand Up @@ -57,7 +57,7 @@
<terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
<pav:importedFrom>http://purl.obolibrary.org/obo/iao.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-01-01 01:41:17</oboInOwl:date>
<oboInOwl:date>2024-02-01 01:26:18</oboInOwl:date>
<rdfs:comment xml:lang="en">An information artifact is, loosely, a dependent continuant or its bearer that is created as the result of one or more intentional processes. Examples: uniprot, the english language, the contents of this document or a printout of it, the temperature measurements from a weather balloon. For more information, see the project home page at https://github.com/information-artifact-ontology/IAO</rdfs:comment>
<rdfs:comment>IDs allocated to related efforts: PNO: IAO_0020000-IAO_0020999, D_ACTS: IAO_0021000-IAO_0021999</rdfs:comment>
<rdfs:comment>IDs allocated to subdomains of IAO. pno.owl: IAO_0020000-IAO_0020999, d-acts.owl: IAO_0021000-IAO_0021999</rdfs:comment>
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2 changes: 1 addition & 1 deletion external-dev/msio-slim.owl
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Expand Up @@ -181,7 +181,7 @@ http://www.cosmos-fp7.eu/WP2</doap:maintainer>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:created_by xml:lang="en">Daniel Schober</oboInOwl:created_by>
<oboInOwl:creation_date xml:lang="en">2017-10-19T10:11:26Z</oboInOwl:creation_date>
<oboInOwl:date>2024-01-01 01:44:28</oboInOwl:date>
<oboInOwl:date>2024-02-01 01:29:11</oboInOwl:date>
<rdfs:comment xml:lang="en">Please see the project site https://github.com/BFO-ontology/BFO, the bfo2 owl discussion group http://groups.google.com/group/bfo-owl-devel, the bfo2 discussion group http://groups.google.com/group/bfo-devel, the tracking google doc http://goo.gl/IlrEE, and the current version of the bfo2 reference http://purl.obolibrary.org/obo/bfo/dev/bfo2-reference.docx. This ontology is generated from a specification at https://github.com/BFO-ontology/BFO/tree/master/src/ontology/owl-group/specification/ and with the code that generates the OWL version in https://github.com/BFO-ontology/BFO/tree/master/src/tools/. A very early version of BFO version 2 in CLIF is at http://purl.obolibrary.org/obo/bfo/dev/bfo.clif.</rdfs:comment>
<rdfs:comment xml:lang="en">The BSD license on the BFO project site refers to code used to build BFO.</rdfs:comment>
<rdfs:comment xml:lang="en">This version (1.1.0) uses the Basic Formal Ontology (BFO) as its top level ontology. We might at some point close the resulting semantic gap by using OBI and IAO as intermediate bridges.</rdfs:comment>
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2 changes: 1 addition & 1 deletion external-dev/ncit-slim.owl
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Expand Up @@ -21,7 +21,7 @@
<terms:title>NCI Thesaurus OBO Edition</terms:title>
<pav:importedFrom>http://purl.obolibrary.org/obo/ncit.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-01-01 01:43:29</oboInOwl:date>
<oboInOwl:date>2024-02-01 01:28:21</oboInOwl:date>
<rdfs:comment>NCI Thesaurus, a controlled vocabulary in support of NCI administrative and scientific activities. Produced by the Enterprise Vocabulary System (EVS), a project by the NCI Center for Biomedical Informatics and Information Technology. National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, U.S.A.</rdfs:comment>
<owl:versionInfo>23.09d</owl:versionInfo>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
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