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| Bingo 1.24.0 | ||
| ------------ | ||
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| The changelog is available `on this page <../../indigo/release-notes/indigo-1.24.0.html>`__ | ||
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| .. list-table:: | ||
| :header-rows: 1 | ||
| :stub-columns: 1 | ||
| :widths: 28 24 24 24 | ||
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| * - | ||
| - |image0| Linux | ||
| - |image1| Windows | ||
| - |image2| Mac OS | ||
| * - Oracle | ||
| - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-oracle-linux-x86_64.zip>`__ | ||
| - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-oracle-windows-msvc-x86_64.zip>`__ | ||
| - binaries upon request. | ||
| * - PostgreSQL 15 | ||
| - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-15-linux-x86_64.zip>`__ | ||
| - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-15-windows-x86_64.zip>`__ | ||
| - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-15-macos-x86_64.zip>`__ | ||
| * - PostgreSQL 14 | ||
| - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-14-linux-x86_64.zip>`__ | ||
| - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-14-windows-x86_64.zip>`__ | ||
| - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-14-macos-x86_64.zip>`__ | ||
| * - PostgreSQL 13 | ||
| - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-13-linux-x86_64.zip>`__ | ||
| - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-13-windows-x86_64.zip>`__ | ||
| - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-13-macos-x86_64.zip>`__ | ||
| * - PostgreSQL 12 | ||
| - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-12-linux-x86_64.zip>`__ | ||
| - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-12-windows-x86_64.zip>`__ | ||
| - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-postgres-12-macos-x86_64.zip>`__ | ||
| * - Microsoft SQL Server | ||
| - \- | ||
| - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.24.0/bingo-sqlserver-windows-latest-x86_64.zip>`__ | ||
| - \- | ||
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| `Source code on GitHub <http://github.com/epam/indigo>`__ | ||
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| .. |image0| image:: ../../assets/Linux.png | ||
| .. |image1| image:: ../../assets/Windows.png | ||
| .. |image2| image:: ../../assets/AppleSZ.png |
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| @@ -0,0 +1,98 @@ | ||
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| .. toctree:: | ||
| :hidden: | ||
| :includehidden: | ||
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| ../../indigo/release-notes/index.rst | ||
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| Indigo 1.24.0 | ||
| ------------- | ||
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| Language Bindings | ||
| ~~~~~~~~~~~~~~~~~ | ||
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| .. list-table:: | ||
| :header-rows: 0 | ||
| :stub-columns: 1 | ||
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| * - |p-icon| Python | ||
| - `indigo-python.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-python.zip>`__ | ||
| * - |j-icon| Java | ||
| - `indigo-java.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-java.zip>`__ | ||
| * - |c-icon| .NET | ||
| - `indigo-dotnet.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-dotnet.zip>`__ | ||
| * - |n-icon| Native Libraries in one archive | ||
| - `indigo-native-shared-libs.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-native-shared-libs.zip>`__ | ||
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| Platform/CPU Bindings | ||
| ~~~~~~~~~~~~~~~~~~~~~ | ||
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| .. list-table:: | ||
| :header-rows: 1 | ||
| :stub-columns: 1 | ||
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| * - | ||
| - |image0| Linux | ||
| - |image1| Windows | ||
| - |image2| Mac OS | ||
| * - |n-icon| Native Libraries x64 | ||
| - `indigo-libs-linux-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-libs-linux-x86_64.zip>`__ | ||
| - `indigo-libs-windows-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-libs-windows-x86_64.zip>`__ | ||
| - `indigo-libs-macos-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-libs-macos-x86_64.zip>`__ | ||
| * - | ||
| - | ||
| - `indigo-libs-windows-mingw-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-libs-windows-mingw-x86_64.zip>`__ | ||
| - | ||
| * - |n-icon| Native Libraries ARM64 | ||
| - `indigo-libs-linux-aarch64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-libs-linux-aarch64.zip>`__ | ||
| - \- | ||
| - `indigo-libs-macos-aarch64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-libs-macos-aarch64.zip>`__ | ||
| * - |n-icon| Native Libraries i386 | ||
| - \- | ||
| - `indigo-libs-windows-i386.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-libs-windows-i386.zip>`__ | ||
| - \- | ||
| * - |n-icon| Utilities x64 | ||
| - `indigo-utils-linux-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-utils-linux-x86_64.zip>`__ | ||
| - `indigo-utils-windows-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-utils-windows-x86_64.zip>`__ | ||
| - `indigo-utils-macos-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.24.0/indigo-utils-macos-x86_64.zip>`__ | ||
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| Source code | ||
| ~~~~~~~~~~~ | ||
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| `Source code zip <https://github.com/epam/Indigo/archive/indigo-1.24.0.zip>`__ | ||
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| `Repository on GitHub <https://github.com/epam/Indigo>`__ | ||
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| NuGet Repository | ||
| ~~~~~~~~~~~~~~~~ | ||
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| Indigo .NET packages available at `Nuget <https://www.nuget.org/packages/Indigo.Net/>`__ | ||
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| Just add ``Indigo.Net`` as a dependency into the project. | ||
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| PyPi package | ||
| ~~~~~~~~~~~~ | ||
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| Indigo Python SDK can be found at `PyPi <https://pypi.org/project/epam.indigo/>`__ | ||
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| One can install the Indigo library using *pip* utility | ||
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| .. code-block:: xml | ||
| pip install epam.indigo | ||
| .. |image0| image:: ../../assets/Linux.png | ||
| .. |image1| image:: ../../assets/Windows.png | ||
| .. |image2| image:: ../../assets/AppleSZ.png | ||
| .. |image3| image:: ../../assets/globe.png | ||
| .. |p-icon| image:: ../../assets/indigo/python-icon.png | ||
| .. |j-icon| image:: ../../assets/indigo/java-icon.png | ||
| .. |c-icon| image:: ../../assets/indigo/csharp-icon.png | ||
| .. |n-icon| image:: ../../assets/indigo/native-icon.png | ||
| .. |w-icon| image:: ../../assets/indigo/wasm-icon.png |
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@@ -7,6 +7,7 @@ Contents: | |
| .. toctree:: | ||
| :maxdepth: 2 | ||
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| indigo-1.24.0 | ||
| indigo-1.23.0 | ||
| indigo-1.22.0 | ||
| indigo-1.21.0 | ||
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| # Indigo 1.24.0 | ||
| Released 2024-10-04 | ||
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| ## Features | ||
| * [2096](https://github.com/epam/Indigo/issues/2096) Support retrosynthetic arrows - PNG/SVG rendering | ||
| * [2097](https://github.com/epam/Indigo/issues/2097) Add retrosynthetic arrow import/export for cdx/cdxml formats | ||
| * [2031](https://github.com/epam/Indigo/issues/2031) Build a data structure for a reaction tree | ||
| * [1619](https://github.com/epam/Indigo/issues/1619) Import/export of variant monomers from IDT | ||
| * [2052](https://github.com/epam/Indigo/issues/2052) Position pathway reaction on canvas | ||
| * [2015](https://github.com/epam/Indigo/issues/2015) Import/Export of variant monomers from Fasta/Sequence | ||
| * [2028](https://github.com/epam/Indigo/issues/2028) PNG image support in CDX/CDXML | ||
| * [2128](https://github.com/epam/Indigo/issues/2128) Add Multi-tail Arrows to Pathway Reactions Loaded from RDF | ||
| * [2188](https://github.com/epam/Indigo/issues/2188) HELM 2 support: variant monomers | ||
| * [2189](https://github.com/epam/Indigo/issues/2189) HELM 2 support: support for SMILES | ||
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| ## Bugfixes | ||
| * [2232](https://github.com/epam/Indigo/issues/2232) System replace arrows of diffrent types with Open Arrow type while loading from PPTX(CDX) | ||
| * [2249](https://github.com/epam/Indigo/issues/2249) Arrow Open Angle changes to Arrow Filled Triangle after saving and opening in CDX/CDXML | ||
| * [2120](https://github.com/epam/Indigo/issues/2120) Export the structure for nucleotides 2-Amino-dA does not work correctly | ||
| * [2266](https://github.com/epam/Indigo/issues/2266) Error message is wrong for missing ratio number (PEPTIDE1{(A:+C:0.1)}$$$$V2.0) | ||
| * [2300](https://github.com/epam/Indigo/issues/2300) HELM loading doesn't work in remote version | ||
| * [2293](https://github.com/epam/Indigo/issues/2293) Export IDT doesn't work for natural ambiguous monomers | ||
| * [2336](https://github.com/epam/Indigo/issues/2336) Ribose sugar doesn't allow to load IDT custom mixed bases | ||
| * [2358](https://github.com/epam/Indigo/issues/2358) Import of monomer with only one connection point (R2) doesn't work | ||
| * [2321](https://github.com/epam/Indigo/issues/2321) Export of multi-character monomer IDs inside ambiguous monomer works wrong | ||
| * [2375](https://github.com/epam/Indigo/issues/2375) Export to IDT doesn't work at all for mixed bases | ||
| * [2356](https://github.com/epam/Indigo/issues/2356) Library ambiguous peptides loaded as mixtures from FASTA | ||
| * [2357](https://github.com/epam/Indigo/issues/2357) Export to HELM doesn't work if we connect peptide TO molecule | ||
| * [2303](https://github.com/epam/Indigo/issues/2303) Import of variant monomers from Sequence doesn't work for RNA and FASTA for RNA/DNA | ||
| * [2355](https://github.com/epam/Indigo/issues/2355) Import of HELM with fractional ratio mixture values doesn't work - system expects integer | ||
| * [2421](https://github.com/epam/Indigo/issues/2421) Incorrect stereo-label placement for (E) and (Z) (indigo part) | ||
| * [2417](https://github.com/epam/Indigo/issues/2417) The layout is incorrect with retrosynthetic arrow | ||
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| **Full Changelog**: https://github.com/epam/Indigo/compare/indigo-1.24.0...indigo-1.23.0 |
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