Merge branch 'master' of https://github.com/epicentre-msf/epivis

.github/workflows/pkgdown.yaml

@@ -11,6 +11,8 @@ on:
 
 name: pkgdown
 
+permissions: read-all
+
 jobs:
   pkgdown:
     runs-on: ubuntu-latest
@@ -22,7 +24,7 @@ jobs:
     permissions:
       contents: write
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-pandoc@v2
 
@@ -41,7 +43,7 @@ jobs:
 
       - name: Deploy to GitHub pages 🚀
         if: github.event_name != 'pull_request'
-        uses: JamesIves/github-pages-deploy-action@v4.4.1
+        uses: JamesIves/github-pages-deploy-action@v4.5.0
         with:
           clean: false
           branch: gh-pages

.gitignore

@@ -4,5 +4,6 @@
 inst/doc
 doc
 Meta
-
-local/
+,DS_Store
+local/
+docs

DESCRIPTION

@@ -2,20 +2,28 @@ Package: epivis
 Title: Tools for visualising epidemiological data
 Version: 0.0.0.9000
 Authors@R: 
-    person(given = "Paul",
-           family = "Campbell",
-           role = c("aut", "cre"),
-           email = "[email protected]",
-           comment = c(ORCID = "0000-0003-1018-6606"))
+    c(person(given = "Paul",
+             family = "Campbell",
+             role = c("aut", "cre"),
+             email = "[email protected]",
+             comment = c(ORCID = "0000-0003-1018-6606")),
+      person(given = "Hugo",
+             family = "Soubrier",
+             role = c("aut"),
+             email = "[email protected]"))
 Description: What the package does (one paragraph).
 License: MIT + file LICENSE
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
 LazyData: true
 Imports: 
+    cli,
+    rlang,
     ggplot2,
     dplyr,
+    purrr,
     tidyr,
+    stringr,
     magrittr,
     scales,
     glue,

_pkgdown.yml

@@ -1,29 +1,24 @@
 url: https://epicentre-msf.github.io/epivis/
-
 destination: docs
-
 template:
-  params:
-    bootswatch: paper
+  bootstrap: 5
 authors:
   Paul Campbell:
     href: https://github.com/paulc91
   Hugo Soubrier:
     href: https://github.com/hugzsoubrier
-
 reference:
 - title: Plotting functions
-  desc:  Functions to make graphics
-  contents:
-  - starts_with("plot")
-
+  desc: Functions to make graphics
+  contents: starts_with("plot")
 - title: Utility functions
   desc: Helpers to make your life easier
   contents:
   - label_breaks
-  - dodge_x_labels
-
+  - dodge_x_labs
 - title: Themes & stylers
   desc: Pre-made themes for standardised tables and ggplots
-  contents:
-  - starts_with("epitheme")
+  contents: starts_with("epitheme")
+- title: Data
+  desc: Example package data
+  contents: moissala_measles