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Add offset to DB and Marziano et al. Mpox parameters #24

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Add offset to DB and Marziano et al. Mpox parameters #24

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16ae302
Update `CITATION.cff`
joshwlambert Dec 18, 2024
e59b0b7
add offset field to all DB entries
joshwlambert Feb 3, 2025
c2245b6
update data dictionary to require parameters and offset in probabilit…
joshwlambert Feb 3, 2025
0530d76
add Mpox incubation period, SI and GT parameters from Marziano et al.…
joshwlambert Feb 4, 2025
d8d2743
remove trailing commas from parameters.json
joshwlambert Feb 4, 2025
8490681
update epiparameterDB data
joshwlambert Feb 4, 2025
7f63ddd
update package documentation file
joshwlambert Feb 4, 2025
39b7db4
update DB size in unit test
joshwlambert Feb 4, 2025
d01805e
add offset description to data_dictionary.json
joshwlambert Feb 4, 2025
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4 changes: 2 additions & 2 deletions CITATION.cff
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Original file line number Diff line number Diff line change
Expand Up @@ -2,13 +2,13 @@
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------

cff-version: 1.2.0
message: 'To cite package "epiparameterDB" in publications use:'
type: software
license: CC0-1.0
title: 'epiparameterDB: Database of Epidemiological Parameters'
version: 0.1.0
version: 0.1.0.9000
doi: 10.32614/CRAN.package.epiparameterDB
abstract: A data package containing a database of epidemiological parameters. It stores
the data for the 'epiparameter' R package. Epidemiological parameter estimates are
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7 changes: 6 additions & 1 deletion inst/extdata/data_dictionary.json
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Expand Up @@ -183,9 +183,14 @@
"type": ["number", "null"]
}
}
},
"offset": {
"description": "A number to shift the probability distribution left or right on the x-axis. If no offset is reported put the default value of 0.",
"examples": [0, 5],
"type": "number"
}
},
"required": ["prob_distribution"],
"required": ["prob_distribution", "parameters", "offset"],
"if": {
"properties": {
"prob_distribution": { "const": "norm" }
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