Initial commit

.editorconfig

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+root = true
+
+[*]
+charset = utf-8
+insert_final_newline = true
+trim_trailing_whitespace = true
+
+[*.md]
+indent_size = 2
+indent_style = space
+max_line_length = 100  # Please keep this in sync with bin/lesson_check.py!
+trim_trailing_whitespace = false  # keep trailing spaces in markdown - 2+ spaces are translated to a hard break (<br/>)
+
+[*.r]
+max_line_length = 80
+
+[*.py]
+indent_size = 4
+indent_style = space
+max_line_length = 79
+
+[*.sh]
+end_of_line = lf
+
+[Makefile]
+indent_style = tab

.github/FUNDING.yml

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+github: [carpentries, swcarpentry, datacarpentry, librarycarpentry]
+custom: ["https://carpentries.wedid.it"]

.github/ISSUE_TEMPLATE/bug_report.md

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+---
+name: Bug report
+about: Create a report to help us improve
+title: ''
+labels: bug
+assignees: ''
+
+---
+
+Thanks for contributing! ❤️
+
+**Describe the bug**
+A clear and concise description of what the bug is.
+
+**To Reproduce**
+Steps to reproduce the behavior:
+1. Go to '...'
+2. Click on '....'
+3. Scroll down to '....'
+4. See error
+
+**Expected behavior**
+A clear and concise description of what you expected to happen.
+
+**Screenshots**
+If applicable, add screenshots to help explain your problem.
+
+**Desktop (please complete the following information):**
+ - OS: [e.g. iOS]
+ - Browser [e.g. chrome, safari]
+ - Version [e.g. 22]
+
+**Smartphone (please complete the following information):**
+ - Device: [e.g. iPhone6]
+ - OS: [e.g. iOS8.1]
+ - Browser [e.g. stock browser, safari]
+ - Version [e.g. 22]
+
+**Additional context**
+Add any other context about the problem here.

.github/ISSUE_TEMPLATE/feature_request.md

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+---
+name: Feature request
+about: Suggest an idea for this project
+title: ''
+labels: 'RFE'
+assignees: ''
+
+---
+
+Thanks for contributing! ❤️
+
+**Is your feature request related to a problem? Please describe.**
+A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]
+
+**Describe the solution you'd like**
+A clear and concise description of what you want to happen.
+
+**Describe alternatives you've considered**
+A clear and concise description of any alternative solutions or features you've considered.
+
+**Additional context**
+Add any other context or screenshots about the feature request here.

.github/PULL_REQUEST_TEMPLATE.md

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+<details>
+<summary><strong>Instructions</strong></summary>
+
+Thanks for contributing! :heart:
+Before submitting this PR, please make sure:
+
+- [ ] Your code builds clean without any errors or warnings
+
+You may delete these instructions from your comment.
+
+\- Escience Center Digital Skills
+</details>

.github/workflows/extract-exercises.yml

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+name: Extract exercises
+on: workflow_dispatch
+jobs:
+  extract:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - name: Setup Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: 3.9
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install caex2
+      - name: Fetch the url for the lesson content github repository from metadata
+        uses: jannekem/run-python-script-action@v1
+        with:
+          script: |
+            import csv
+            from urllib.request import urlretrieve
+
+            with open('_data/data.csv', newline='') as csvfile:
+                reader = csv.DictReader(csvfile)
+                for row in reader:
+                    curriculum = row['curriculum']
+            link = f"https://raw.githubusercontent.com/esciencecenter-digital-skills/workshop-metadata/main/{curriculum}/lesson-url.md"
+            urlretrieve(link, "lesson-url.txt")
+      - name: Run Carpentries Exercises Extractor
+        run: caex2 "$(cat lesson-url.txt)" --output files/exercises-document.md
+        shell: sh
+      - name: Commit exercises document
+        uses: stefanzweifel/git-auto-commit-action@v4
+        with:
+          commit_message: Automatically add exercises document
+          file_pattern: files/exercises-document.md

.github/workflows/jekyll.yml

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+name: Build and Deploy to Github Pages
+
+on:
+  workflow_dispatch:
+  release:
+    types:
+      - published
+  pull_request:
+    branches:
+      - main
+
+jobs:
+  build_and_deploy:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+
+      # Use GitHub Actions' cache to cache dependencies on servers
+      - uses: actions/cache@v4
+        with:
+          path: |
+            .asdf/**
+            vendor/bundle
+          key: ${{ runner.os }}-cache-${{ hashFiles('**/cache.key') }}
+          restore-keys: |
+            ${{ runner.os }}-cache-
+
+      # Use GitHub Deploy Action to build and deploy to Github
+      # For latest version: `jeffreytse/jekyll-deploy-action@master`
+      - uses: jeffreytse/[email protected]
+        with:
+          provider: 'github'         # Default is github
+          token: ${{ secrets.GITHUB_TOKEN }} # It's your Personal Access Token(PAT)
+          ssh_private_key: ''        # It's your SSH private key (SSH approach)
+          repository: ''             # Default is current repository
+          branch: 'gh-pages'         # Default is gh-pages for github provider
+          jekyll_src: './'           # Default is root directory
+          jekyll_cfg: '_config.yml'  # Default is _config.yml
+          jekyll_baseurl: ''         # Default is according to _config.yml
+          ruby_ver: ''               # Default is 3.2.0 version
+          bundler_ver: ''            # Default is compatible bundler version (~>2.5.0)
+          cname: ''                  # Default is to not use a cname
+          actor: ''                  # Default is the GITHUB_ACTOR
+          pre_build_commands: ''     # Installing additional dependencies (Arch Linux)

.gitignore

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+*.pyc
+*~
+.*.swp
+.DS_Store
+.ipynb_checkpoints
+.sass-cache
+.jekyll-cache/
+.jekyll-metadata
+__pycache__
+_site
+.Rproj.user
+.Rhistory
+.RData
+.bundle/
+.vendor/
+vendor/
+.docker-vendor/
+Gemfile.lock
+.*history

.mailmap

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+Abigail Cabunoc Mayes <[email protected]>
+Abigail Cabunoc Mayes <[email protected]> <[email protected]>
+Amy Brown <[email protected]> <[email protected]>
+Andrew Walker <[email protected]> <[email protected]>
+Andy Boughton <[email protected]> <[email protected]>
+Ben Jolly <[email protected]>
+Erin Becker <[email protected]>
+Evan P. Williamson <[email protected]>
+François Michonneau <[email protected]>
+François Michonneau <[email protected]> <[email protected]>
+Greg Wilson <[email protected]> <[email protected]>
+James Allen <[email protected]> <[email protected]>
+Jonah Duckles <[email protected]> <[email protected]>
+Jonathan Cooper <[email protected]> <[email protected]>
+Lauren Michael <[email protected]>
+Leighton Pritchard <[email protected]>
+Lex Nederbragt <[email protected]> <[email protected]>
+Maneesha Sane <[email protected]>
+Marianna Foos <[email protected]>
+Maxim Belkin <[email protected]> <[email protected]>
+Mike Jackson <[email protected]> <[email protected]>
+Neal Davis <[email protected]> <[email protected]>
+Pauline Barmby <[email protected]>
+Philipp Von Bieberstein <[email protected]>
+Raniere Silva <[email protected]> <[email protected]>
+Raniere Silva <[email protected]> <[email protected]>
+Rémi Emonet <[email protected]> <[email protected]>
+Rémi Emonet <[email protected]> <[email protected]>
+Sarah Stevens <[email protected]> <[email protected]>
+Timothée Poisot <[email protected]> <[email protected]>
+Yashasvi Girdhar <[email protected]>

.travis.yml

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+language: python
+python:
+  - "3.6"
+# Remember that the code is running on a 14.04 machine.  
+#  - "3.4"
+# command to install dependencies
+install:
+  - pip install -r requirements.txt  
+    # as per https://docs.travis-ci.com/user/installing-dependencies/  
+# command to run tests
+before_script:
+  - "python bin/_travis.py"  
+script:
+  - python bin/workshop_check.py .
+  - python -m unittest bin/_test/bs4test.py 
+branches:
+  only:
+    - gh-pages

404.md

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+---
+layout: base
+root: .
+permalink: 404.html
+title: "Page not found"
+---
+{% comment %}
+Assign first row in data file as info to access workshop data
+{% endcomment %}
+{% assign info = site.data.data[0] %}
+# Oops! We can't find that page.
+{: style="text-align: center;"}
+
+> ## Our apologies!
+>
+> We can't seem to find the page you're looking for.
+> Try going back to the <a href="javascript:history.back()">previous page</a> or
+> navigate to any other page using the navigation bar above
+> {%- if site.kind == "lesson" -%} or the schedule below {%- endif -%}.
+> If you got here by clicking on a link in the
+> {%- if site.kind == "lesson" -%} lesson {%- else -%} workshop {%- endif -%},
+> please report this link to the
+> {%- if site.kind == "lesson" -%} lesson developers {%- else -%} workshop organizers {%- endif -%}.
+{: .caution}
+
+{% if site.kind == "lesson" %}
+  {% include syllabus.html %}
+{% endif%}

AUTHORS

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+Aron Ahmadia
+Phillip Alderman
+James Allen
+Piotr Banaszkiewicz
+Pauline Barmby
+Radovan Bast
+John Blischak
+Olga Botvinnik
+Andy Boughton
+Erik M. Bray
+Amy Brown
+C. Titus Brown
+Greg Caporaso
+Sarah Clayton
+Matt Davis
+Neal Davis
+Jonah Duckles
+Marianna Foos
+Yashasvi Girdhar
+Ivan Gonzalez
+John Gosset
+Alistair Grant
+Thomas Guignard
+Konrad Hinsen
+Xavier Ho
+Damien Irving
+Mike Jackson
+Ben Jolly
+Jan T. Kim
+W. Trevor King
+David LeBauer
+Joona Lehtomäki
+Kunal Marwaha
+Sheldon McKay
+Lauren Michael
+François Michonneau
+Lex Nederbragt
+Aleksandra Nenadic
+Jeramia Ory
+Fernando Perez
+Leighton Pritchard
+Andrey Prokopenko
+Scott Ritchie
+Maneesha Sane
+Raniere Silva
+Arfon Smith
+Ashwin Srinath
+Sarah Stevens
+Julia Stewart Lowndes
+Tracy Teal
+Stefan Topfstedt
+Olav Vahtras
+Philipp Von Bieberstein
+Andrew Walker
+Ben Waugh
+Lukas Weber
+Ethan White
+Jason Williams
+Carol Willing
+Greg Wilson
+Tom Wright
+Andrea Zonca
+Alex Thompson
+Jonathan Cooper
+Marcel Stimberg
+Mark A. Matienzo
+Steve Moss

CITATION

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+Please cite as:
+
+Greg Wilson (ed): "Software Carpentry: Workshop Template."  Version
+2016.06, June 2016, https://github.com/carpentries/workshop-template,
+10.5281/zenodo.58156.

CODE_OF_CONDUCT.md

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+---
+layout: page
+title: "Contributor Code of Conduct"
+---
+As contributors and maintainers of this project,
+we pledge to follow the [Carpentry Code of Conduct][coc].
+
+Instances of abusive, harassing, or otherwise unacceptable behavior
+may be reported by following our [reporting guidelines][coc-reporting].
+
+{% include links.md %}