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Added MCMC link to README
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ihh committed Mar 6, 2017
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# wtfgenes

What is The Function of these genes?
**What is The Function of these genes?**

Implements Bayesian [Term Enrichment Analysis](https://en.wikipedia.org/wiki/Gene_Ontology_Term_Enrichment) (TEA) using MCMC,
Answer this question with Bayesian [Term Enrichment Analysis](https://en.wikipedia.org/wiki/Gene_Ontology_Term_Enrichment) (TEA)
using a model described [here](https://github.com/ihh/wtfgenes-appnote)
and loosely based on the following method:

- Nucleic Acids Res. 2010. [GOing Bayesian: model-based gene set analysis of genome-scale data.](http://www.ncbi.nlm.nih.gov/pubmed/20172960) Bauer S, Gagneur J, Robinson PN.

The software also implements Frequentist TEA (a.k.a. Fisher's ["lady tasting tea"](https://en.wikipedia.org/wiki/Lady_tasting_tea) test).
The wtfgenes software also implements Frequentist TEA (a.k.a. Fisher's ["lady tasting tea"](https://en.wikipedia.org/wiki/Lady_tasting_tea) test).

## Demo

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## Basic operation (node client)

The basic sequence of operations is described [here](https://github.com/ihh/wtfgenes-appnote).
Essentially, you run the sampler for a while, and then you get a report on which terms are enriched in the dataset.
Essentially, you run the [MCMC sampler](https://en.wikipedia.org/wiki/Markov_chain_Monte_Carlo) for a while, and then you get a report on which terms are enriched in the dataset.

## Basic operation (web client)

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