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Refactor BfabricTestCaseReadEndPoints #53

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merged 1 commit into from
Jan 5, 2024
Merged

Refactor BfabricTestCaseReadEndPoints #53

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83 changes: 38 additions & 45 deletions bfabric/tests/test_bfabric_read.py
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Original file line number Diff line number Diff line change
@@ -1,71 +1,64 @@
#!/usr/bin/env python3
# -*- coding: latin1 -*-

"""
unittest by <[email protected]>
2019-09-11
"""

import base64
import unittest
import bfabric
import os
import json
import os
import unittest

class BfabricTestCaseReadEndPoints(unittest.TestCase):

with open('groundtruth.json') as json_file:
groundtruth = json.load(json_file)
import bfabric

bfapp = bfabric.Bfabric(verbose=False)

def __init__(self, *args, **kwargs):
super(BfabricTestCaseReadEndPoints, self).__init__(*args, **kwargs)
class BfabricTestCaseReadEndPoints(unittest.TestCase):
@classmethod
def setUpClass(cls):
path = os.path.join(os.path.dirname(__file__), "groundtruth.json")
with open(path) as json_file:
cls.ground_truth = json.load(json_file)
cls.bfapp = bfabric.Bfabric(verbose=False)

# input: entity = endpoint = table = ...
def read(self, endpoint):
self.assertIn(endpoint, self.groundtruth)
for (query, groundtruth) in self.groundtruth[endpoint]:
"""Executes read queries for `endpoint` and compares results with ground truth."""
self.assertIn(endpoint, self.ground_truth)
for query, ground_truth in self.ground_truth[endpoint]:
res = self.bfapp.read_object(endpoint=endpoint, obj=query)
for gtattr, gtvalue in groundtruth.items():
#if self.verbosity>2:
# print ("{}:{} = {} \t?\t{}".format(endpoint, gtattr, gtvalue, getattr(res[0], gtattr)))
for gt_attr, gt_value in ground_truth.items():
with self.subTest(endpoint=endpoint, query=query):
# sort results for comparison by id
res = sorted(res, key=lambda x: x._id)

# to make it deterministic!
try:
res = sorted(res, key = lambda x: x.id)
except:
res = sorted(res, key = lambda x: x._id)

msg = "test for {} failed.".format(endpoint)
# cast all values to string
self.assertEqual("{}".format(gtvalue), "{}".format(getattr(res[0], gtattr)), msg)
# cast all values to strings (i.e. ignoring int/float/string differences)
self.assertEqual(str(gt_value), str(res[0][gt_attr]))

def test_user(self):
self.read('user')
self.read("user")

def test_container(self):
self.read('container')
self.read("container")

def test_project(self):
self.read('project')
self.read("project")

def test_application(self):
self.read('application')
self.read("application")

def test_sample(self):
self.read('sample')
self.read("sample")

def test_workunit(self):
self.read('workunit')
self.read("workunit")

def test_resource(self):
self.read('resource')
self.read("resource")

def test_executable(self):
self.read('executable')
def test_annotation(self):
self.read('annotation')
self.read("executable")

if __name__ == '__main__':
# unittest.main(verbosity=2)
suite = unittest.TestSuite()
for entity in ['user', 'container', 'project', 'application', 'sample', 'workunit', 'resource', 'executable', 'annotation']:
suite.addTest(BfabricTestCaseReadEndPoints('test_{}'.format(entity)))
def test_annotation(self):
self.read("annotation")

runner = unittest.TextTestRunner(verbosity=3)
runner.run(suite )

if __name__ == "__main__":
unittest.main(verbosity=2)
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