Built site for gh-pages

flexie · Feb 22, 2024 · ab6bc52 · ab6bc52
1 parent 8624390
commit ab6bc52
Show file tree

Hide file tree

Showing 37 changed files with 1,858 additions and 1,942 deletions.
diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
-462875b0
+d1dbcc72
diff --git a/labs/01intro/underfitting_overfitting-preview.html b/labs/01intro/underfitting_overfitting-preview.html
@@ -1,7 +1,7 @@
 <!DOCTYPE html>
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
     <meta charset="utf-8">
-    <meta name="generator" content="quarto-1.4.549">
+    <meta name="generator" content="quarto-1.4.528">
 
     <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -218,7 +218,7 @@ <h6><i class="bi bi-journal-code"></i> Intro</h6>
 <div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article">
 <!-- sidebar -->
   <nav id="quarto-sidebar" class="sidebar collapse collapse-horizontal quarto-sidebar-collapse-item sidebar-navigation docked overflow-auto">
-    <div class="pt-lg-2 mt-2 text-left sidebar-header">
+    <div class="pt-lg-2 mt-2 text-center sidebar-header">
       <a href="../../index.html" class="sidebar-logo-link">
       <img src="../../images/digitaltwin.png" alt="" class="sidebar-logo py-0 d-lg-inline d-none">
       </a>
@@ -509,12 +509,7 @@ <h6><i class="bi bi-journal-code"></i> Intro</h6>
       if (window.Quarto?.typesetMath) {
         window.Quarto.typesetMath(note);
       }
-      // TODO in 1.5, we should make sure this works without a callout special case
-      if (note.classList.contains("callout")) {
-        return note.outerHTML;
-      } else {
-        return note.innerHTML;
-      }
+      return note.innerHTML;
     }
   }
   for (var i=0; i<xrefs.length; i++) {

diff --git a/labs/01intro/underfitting_overfitting.out.ipynb b/labs/01intro/underfitting_overfitting.out.ipynb
@@ -6,7 +6,7 @@
       "source": [
         "#"
       ],
-      "id": "733882c3-78c5-461c-a626-749dc2123b61"
+      "id": "0e87f4ce-728f-49d2-a373-611489b62554"
     },
     {
       "cell_type": "code",
@@ -47,7 +47,7 @@
         "the validation set. The higher the value, the less likely the model\n",
         "generalizes correctly from the training data since it is brittle."
       ],
-      "id": "ab21fe6e-ef2e-4518-91fe-d3fed9c5a955"
+      "id": "b8a3ba86-b279-442a-a527-a86b6f1dd699"
     },
     {
       "cell_type": "code",

diff --git a/labs/02Examples/ad/autograd_lin_reg-preview.html b/labs/02Examples/ad/autograd_lin_reg-preview.html
@@ -1,7 +1,7 @@
 <!DOCTYPE html>
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
     <meta charset="utf-8">
-    <meta name="generator" content="quarto-1.4.549">
+    <meta name="generator" content="quarto-1.4.528">
 
     <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -218,7 +218,7 @@ <h6><i class="bi bi-journal-code"></i> Linear Regression with <code>autograd</co
 <div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article">
 <!-- sidebar -->
   <nav id="quarto-sidebar" class="sidebar collapse collapse-horizontal quarto-sidebar-collapse-item sidebar-navigation docked overflow-auto">
-    <div class="pt-lg-2 mt-2 text-left sidebar-header">
+    <div class="pt-lg-2 mt-2 text-center sidebar-header">
       <a href="../../../index.html" class="sidebar-logo-link">
       <img src="../../../images/digitaltwin.png" alt="" class="sidebar-logo py-0 d-lg-inline d-none">
       </a>
@@ -559,12 +559,7 @@ <h2 class="anchored" data-anchor-id="linear-regression-with-autograd">Linear Reg
       if (window.Quarto?.typesetMath) {
         window.Quarto.typesetMath(note);
       }
-      // TODO in 1.5, we should make sure this works without a callout special case
-      if (note.classList.contains("callout")) {
-        return note.outerHTML;
-      } else {
-        return note.innerHTML;
-      }
+      return note.innerHTML;
     }
   }
   for (var i=0; i<xrefs.length; i++) {

diff --git a/labs/02Examples/ad/autograd_lin_reg.out.ipynb b/labs/02Examples/ad/autograd_lin_reg.out.ipynb
@@ -18,7 +18,7 @@
         "\n",
         "In a later example, this will be done using `pytorch`."
       ],
-      "id": "ae318ffd-bf76-4f63-9fbd-af612867553a"
+      "id": "817b602f-4411-4508-b6d0-4eab3d184666"
     },
     {
       "cell_type": "code",
@@ -92,7 +92,7 @@
       "source": [
         "Let us compare with `scikit_learn`"
       ],
-      "id": "d52587c0-5bfb-4dd2-b6c0-7190c957d496"
+      "id": "f71f3556-3988-4c35-bcc8-fe8a3a89065b"
     },
     {
       "cell_type": "code",

diff --git a/labs/02Examples/ad/autograd_tut-preview.html b/labs/02Examples/ad/autograd_tut-preview.html
@@ -1,7 +1,7 @@
 <!DOCTYPE html>
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
     <meta charset="utf-8">
-    <meta name="generator" content="quarto-1.4.549">
+    <meta name="generator" content="quarto-1.4.528">
 
     <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -218,7 +218,7 @@ <h6><i class="bi bi-journal-code"></i> <code>Autograd</code> tutorial</h6>
 <div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article">
 <!-- sidebar -->
   <nav id="quarto-sidebar" class="sidebar collapse collapse-horizontal quarto-sidebar-collapse-item sidebar-navigation docked overflow-auto">
-    <div class="pt-lg-2 mt-2 text-left sidebar-header">
+    <div class="pt-lg-2 mt-2 text-center sidebar-header">
       <a href="../../../index.html" class="sidebar-logo-link">
       <img src="../../../images/digitaltwin.png" alt="" class="sidebar-logo py-0 d-lg-inline d-none">
       </a>
@@ -1039,12 +1039,7 @@ <h3 class="anchored" data-anchor-id="autograd-implementation-of-stochastic-gradi
       if (window.Quarto?.typesetMath) {
         window.Quarto.typesetMath(note);
       }
-      // TODO in 1.5, we should make sure this works without a callout special case
-      if (note.classList.contains("callout")) {
-        return note.outerHTML;
-      } else {
-        return note.innerHTML;
-      }
+      return note.innerHTML;
     }
   }
   for (var i=0; i<xrefs.length; i++) {

diff --git a/labs/02Examples/ad/autograd_tut.out.ipynb b/labs/02Examples/ad/autograd_tut.out.ipynb
@@ -80,7 +80,7 @@
         "\n",
         "## Autograd Basic Usage"
       ],
-      "id": "b640b00d-33a0-418f-bacb-f808742060b0"
+      "id": "49ae9b84-2925-4499-9d91-8d891bb00309"
     },
     {
       "cell_type": "code",
@@ -174,7 +174,7 @@
         "> the perspective of computational complexity, the order makes all the\n",
         "> difference."
       ],
-      "id": "ce7da9b1-2bce-48a0-b0d3-57c7e5ae873c"
+      "id": "24190a96-f526-43ad-9dfb-00eeae253bb7"
     },
     {
       "cell_type": "code",
@@ -263,7 +263,7 @@
         "The `@primitive` decorator wraps a function so that its gradient can be\n",
         "specified manually and its invocation can be recorded."
       ],
-      "id": "30612f44-ddfb-41c7-baf8-8c63cf8fcdad"
+      "id": "b9c33cb9-2176-4d31-9aae-bb9ad7149511"
     },
     {
       "cell_type": "code",
@@ -369,7 +369,7 @@
         "\\mathcal{E}(w,b) = \\frac{1}{N} \\sum_{i=1}^N \\mathcal{L}(y_i, t_i) = \\frac{1}{N} \\sum_{i=1}^N \\frac{1}{2} \\left(wx_i + b - t_i \\right)^2\n",
         "$$"
       ],
-      "id": "af3a59e5-0028-47f9-9a59-4e6af71e9094"
+      "id": "4538f745-7dec-4565-bdee-873fd3c72969"
     },
     {
       "cell_type": "code",
@@ -406,7 +406,7 @@
         "underlying regularity, but for which individual observations are\n",
         "corrupted by random noise."
       ],
-      "id": "487f9e5f-383e-4bee-89cc-b7dec7bebd1f"
+      "id": "2f968b42-2a39-405d-9b6c-b2027cfaa280"
     },
     {
       "cell_type": "code",
@@ -520,7 +520,7 @@
         "\\mathbf{\\phi}(x) = \\begin{pmatrix}\\phi_1(x) \\\\ \\phi_2(x) \\\\ \\phi_3(x) \\\\ \\phi_4(x) \\end{pmatrix} = \\begin{pmatrix}1\\\\x\\\\x^2\\\\x^3\\end{pmatrix}\n",
         "$$"
       ],
-      "id": "a09ede4b-3872-4d46-85f8-820721b60acd"
+      "id": "deafc4fe-2fe4-443b-b4d8-83cda94311f8"
     },
     {
       "cell_type": "code",
@@ -618,7 +618,7 @@
         "automatically computes the backward pass. It essentially executes the\n",
         "backpropagation algorithm implicitly."
       ],
-      "id": "9fac9ad8-ae25-4695-bb47-2890f0b92f88"
+      "id": "5a42e9e6-c3e6-47fc-b944-5f4301917b53"
     },
     {
       "cell_type": "code",
@@ -661,7 +661,7 @@
         "\n",
         "The next example shows how to use the `sgd` function."
       ],
-      "id": "8f73d522-4e5d-439f-94a2-f79f3042cce9"
+      "id": "e7186340-9d0b-4a59-aaad-9d7feea33395"
     },
     {
       "cell_type": "code",

diff --git a/labs/02Examples/ad/diff_prog-preview.html b/labs/02Examples/ad/diff_prog-preview.html
@@ -1,7 +1,7 @@
 <!DOCTYPE html>
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
     <meta charset="utf-8">
-    <meta name="generator" content="quarto-1.4.549">
+    <meta name="generator" content="quarto-1.4.528">
 
     <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -218,7 +218,7 @@ <h6><i class="bi bi-journal-code"></i> Intro Differentiable Programming</h6>
 <div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article">
 <!-- sidebar -->
   <nav id="quarto-sidebar" class="sidebar collapse collapse-horizontal quarto-sidebar-collapse-item sidebar-navigation docked overflow-auto">
-    <div class="pt-lg-2 mt-2 text-left sidebar-header">
+    <div class="pt-lg-2 mt-2 text-center sidebar-header">
       <a href="../../../index.html" class="sidebar-logo-link">
       <img src="../../../images/digitaltwin.png" alt="" class="sidebar-logo py-0 d-lg-inline d-none">
       </a>
@@ -604,12 +604,7 @@ <h1>Automatic Differentiation</h1>
       if (window.Quarto?.typesetMath) {
         window.Quarto.typesetMath(note);
       }
-      // TODO in 1.5, we should make sure this works without a callout special case
-      if (note.classList.contains("callout")) {
-        return note.outerHTML;
-      } else {
-        return note.innerHTML;
-      }
+      return note.innerHTML;
     }
   }
   for (var i=0; i<xrefs.length; i++) {

diff --git a/labs/02Examples/ad/diff_prog.out.ipynb b/labs/02Examples/ad/diff_prog.out.ipynb
@@ -22,7 +22,7 @@
         "\n",
         "evaluated at the point $x = 0.1.$"
       ],
-      "id": "f38ca21e-6f8d-40b0-95a3-8257c4d0aae1"
+      "id": "58b0a1be-1b95-4352-a146-a3dde2484c1d"
     },
     {
       "cell_type": "code",
@@ -76,7 +76,7 @@
         "to complex and redundant expressions. In addition, balckbox routines\n",
         "cannot be differentiated."
       ],
-      "id": "a0b62e4c-dd69-40bd-ab88-0c623ac3ac2f"
+      "id": "38c67860-ba0d-4346-935f-11315095a732"
     },
     {
       "cell_type": "code",
@@ -112,7 +112,7 @@
         "Note that the derivative of $$ \\sigma(x) = \\frac{1}{1+e^{-x}}$$ can be\n",
         "simply written as $$ \\frac{d\\sigma }{dx}= (1-\\sigma(x)) \\sigma(x)$$"
       ],
-      "id": "851070cc-74f7-4d06-b6fb-ba5bcee06337"
+      "id": "2d582dbb-6a57-4e87-9c74-417b703cd300"
     },
     {
       "cell_type": "code",
@@ -154,7 +154,7 @@
         "\n",
         "Here we show the simplicity and efficiency of `autograd` from `numpy`."
       ],
-      "id": "edfc32e9-a943-440f-be98-f5ccd8fe5869"
+      "id": "b4c53a07-9a54-4dcb-b51f-2a84810d0818"
     },
     {
       "cell_type": "code",

diff --git a/labs/02Examples/pytorch/Torch_test_GPU_CPU-preview.html b/labs/02Examples/pytorch/Torch_test_GPU_CPU-preview.html
@@ -1,7 +1,7 @@
 <!DOCTYPE html>
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
     <meta charset="utf-8">
-    <meta name="generator" content="quarto-1.4.549">
+    <meta name="generator" content="quarto-1.4.528">
 
     <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -218,7 +218,7 @@ <h6><i class="bi bi-journal-code"></i> GPUs</h6>
 <div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article">
 <!-- sidebar -->
   <nav id="quarto-sidebar" class="sidebar collapse collapse-horizontal quarto-sidebar-collapse-item sidebar-navigation docked overflow-auto">
-    <div class="pt-lg-2 mt-2 text-left sidebar-header">
+    <div class="pt-lg-2 mt-2 text-center sidebar-header">
       <a href="../../../index.html" class="sidebar-logo-link">
       <img src="../../../images/digitaltwin.png" alt="" class="sidebar-logo py-0 d-lg-inline d-none">
       </a>
@@ -533,12 +533,7 @@ <h2 class="anchored" data-anchor-id="conclusion">Conclusion</h2>
       if (window.Quarto?.typesetMath) {
         window.Quarto.typesetMath(note);
       }
-      // TODO in 1.5, we should make sure this works without a callout special case
-      if (note.classList.contains("callout")) {
-        return note.outerHTML;
-      } else {
-        return note.innerHTML;
-      }
+      return note.innerHTML;
     }
   }
   for (var i=0; i<xrefs.length; i++) {

diff --git a/labs/02Examples/pytorch/Torch_test_GPU_CPU.out.ipynb b/labs/02Examples/pytorch/Torch_test_GPU_CPU.out.ipynb
@@ -6,7 +6,7 @@
       "source": [
         "#"
       ],
-      "id": "1f9bf25d-b267-4f21-ad17-2036e66310e1"
+      "id": "d6636374-d419-4ab3-b2c6-e3b0b49d3200"
     },
     {
       "cell_type": "code",
@@ -102,7 +102,7 @@
         "Here is a slightly more complex examples, with a matrix-vector tensor\n",
         "multiplication."
       ],
-      "id": "9ff26694-01f3-499c-9265-74f0021e1f1f"
+      "id": "0746f968-1c5d-49e4-abe5-76158e55d12c"
     },
     {
       "cell_type": "code",
@@ -138,7 +138,7 @@
         "Now, we drastically increase the problem size, using the tensor\n",
         "dimension."
       ],
-      "id": "25f8960a-fe27-46da-a9d5-785c64798d2d"
+      "id": "addcc013-c81c-4c3c-8aa7-2928d133bcb1"
     },
     {
       "cell_type": "code",
@@ -222,7 +222,7 @@
         "This is well known with GPUs: they are only faster if you put a large\n",
         "computational load. It is not specific to pytorch or to MPS…"
       ],
-      "id": "f84bc77f-2a20-4ebf-9df3-eb8807e5207f"
+      "id": "95212731-4c6f-4e88-8564-351889d6eba4"
     }
   ],
   "nbformat": 4,

diff --git a/labs/02Examples/pytorch/pytorch_101-preview.html b/labs/02Examples/pytorch/pytorch_101-preview.html
@@ -1,7 +1,7 @@
 <!DOCTYPE html>
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
     <meta charset="utf-8">
-    <meta name="generator" content="quarto-1.4.549">
+    <meta name="generator" content="quarto-1.4.528">
 
     <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -218,7 +218,7 @@ <h6><i class="bi bi-journal-code"></i> Basics</h6>
 <div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article">
 <!-- sidebar -->
   <nav id="quarto-sidebar" class="sidebar collapse collapse-horizontal quarto-sidebar-collapse-item sidebar-navigation docked overflow-auto">
-    <div class="pt-lg-2 mt-2 text-left sidebar-header">
+    <div class="pt-lg-2 mt-2 text-center sidebar-header">
       <a href="../../../index.html" class="sidebar-logo-link">
       <img src="../../../images/digitaltwin.png" alt="" class="sidebar-logo py-0 d-lg-inline d-none">
       </a>
@@ -1314,12 +1314,7 @@ <h2 class="anchored" data-anchor-id="running-computations-on-the-gpu">3. Running
       if (window.Quarto?.typesetMath) {
         window.Quarto.typesetMath(note);
       }
-      // TODO in 1.5, we should make sure this works without a callout special case
-      if (note.classList.contains("callout")) {
-        return note.outerHTML;
-      } else {
-        return note.innerHTML;
-      }
+      return note.innerHTML;
     }
   }
   for (var i=0; i<xrefs.length; i++) {