adding Megahit separate module #35
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fixing DOI
fixing example command
fixed additional parameter in quast
added example samplesheet for illumina only tests
fixing boolean param
adding example samplesheet for long reads only tests
adding example samplesheet for hybrid tests
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Although Megaahit was already present inside the docker image and the core of the pipeline as it was used by Shovill, Shovill is an assembler focused in bacterias, and, in their manual, they instruct users to run Megahit directly when working with non-bacterial samples.
Thus, we seen the need to incorporate a new module that runs Megahit directly as well instead of only underneath Shovill.