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jsonlab update affiliation
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git-svn-id: http://svn.code.sf.net/p/iso2mesh/code/trunk/iso2mesh@500 786e58fb-9377-0410-9ff7-e4ac0ac0635c
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fangq committed Sep 19, 2015
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Showing 78 changed files with 78 additions and 78 deletions.
2 changes: 1 addition & 1 deletion advancefront.m
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% advance an edge-front on an oriented surface to the next separated by
% one-element width
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2012/02/09
%
% input:
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2 changes: 1 addition & 1 deletion bbxflatsegment.m
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% decompose edge loops into flat segments along the x/y/z
% planes of the bounding box
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2008/04/08
%
% input:
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2 changes: 1 addition & 1 deletion deislands3d.m
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%
% remove isolated islands for 3D image (for each slice)
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% img: a 3D volumetric image
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2 changes: 1 addition & 1 deletion delendelem.m
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%
% delete elements whose nodes are all edge nodes
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2007/11/24
%
% input/output:
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2 changes: 1 addition & 1 deletion deletemeshfile.m
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%
% delete a given work mesh file under the working directory
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% fname: specified file name (without path)
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2 changes: 1 addition & 1 deletion edgeneighbors.m
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%
% to find neighboring triangular elements in a triangule surface
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% t: a triangular surface element list, 3 columns of integers
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2 changes: 1 addition & 1 deletion elemvolume.m
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%
% calculate the volume for a list of simplexes
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2007/11/21
%
% input:
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2 changes: 1 addition & 1 deletion extractloops.m
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%
% extract individual loop or polyline segment from a collection of edges
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2007/11/21
%
% input:
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2 changes: 1 addition & 1 deletion faceneighbors.m
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%
% to find 4 face-neighboring elements of a tetrahedron
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% t: tetrahedron element list, 4 columns of integers
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2 changes: 1 addition & 1 deletion fallbackexeext.m
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%
% get the fallback external tool extension names for the current platform
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% exesuffix: the output executable suffix from getexeext
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2 changes: 1 addition & 1 deletion fillholes3d.m
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%
% close a 3D image with the speicified gap size and then fill the holes
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% img: a 3D binary image
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2 changes: 1 addition & 1 deletion flatsegment.m
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%
% decompose edge loops into flat segments alone arbitrary planes of the bounding box
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2008/04/08
%
% this code is fragile: it can not handle curves with many co-linear
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2 changes: 1 addition & 1 deletion getexeext.m
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%
% get meshing external tool extension names for the current platform
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
%
% output:
% exesuff: file extension for iso2mesh tool binaries
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2 changes: 1 addition & 1 deletion getintersecttri.m
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% get the IDs of self-intersecting elements from tetgen
% call this when tetgen complains about self-intersection
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% tmppath: working dir, use mwpath('') in most cases
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2 changes: 1 addition & 1 deletion getplanefrom3pt.m
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%
% define a plane equation ax+by+cz+d=0 from three 3D points
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% plane: a 3x3 matrix with each row specifying a 3D point (x,y,z)
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2 changes: 1 addition & 1 deletion getvarfrom.m
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%
% get variable value by name from specified work-space
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% ws: name of the work-space, for example, 'base'
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2 changes: 1 addition & 1 deletion internalpoint.m
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% imperical function to find an internal point
% of a planar polygon
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2008/04/08
%
% input:
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2 changes: 1 addition & 1 deletion iso2meshver.m
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%
% get the version number of iso2mesh toolbox
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
%
% output:
% if you ask for a single output:
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2 changes: 1 addition & 1 deletion isoctavemesh.m
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%
% determine whether the code is running in octave
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
%
% output:
% isoctave: 1 if in octave, otherwise 0
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2 changes: 1 addition & 1 deletion jsonopt.m
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% setting options based on a struct. The struct can be produced
% by varargin2struct from a list of 'param','value' pairs
%
% authors:Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
%
% $Id: loadjson.m 371 2012-06-20 12:43:06Z fangq $
%
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2 changes: 1 addition & 1 deletion loadjson.m
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%
% parse a JSON (JavaScript Object Notation) file or string
%
% authors:Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% created on 2011/09/09, including previous works from
%
% Nedialko Krouchev: http://www.mathworks.com/matlabcentral/fileexchange/25713
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2 changes: 1 addition & 1 deletion loadubjson.m
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%
% parse a JSON (JavaScript Object Notation) file or string
%
% authors:Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% created on 2013/08/01
%
% $Id: loadubjson.m 487 2015-05-06 18:19:07Z fangq $
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2 changes: 1 addition & 1 deletion maxsurf.m
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% return the surface with the maximum element number or
% total area from a cell arry of surfaces
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% facecell: a cell array, each element is a face array
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2 changes: 1 addition & 1 deletion mcpath.m
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% get full executable path by prepending a command directory path
% parameters:
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% fname: input, a file name string
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2 changes: 1 addition & 1 deletion mergestruct.m
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%
% merge two struct objects into one
%
% authors:Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2012/12/22
%
% input:
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2 changes: 1 addition & 1 deletion meshcentroid.m
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% compute the centroids of a mesh defined by nodes and elements
% (surface or tetrahedra) in R^n space
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% v: surface node list, dimension (nn,3)
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2 changes: 1 addition & 1 deletion meshcheckrepair.m
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%
% check and repair a surface mesh
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2008/10/10
%
% input/output:
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2 changes: 1 addition & 1 deletion meshconn.m
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%
% create node neighbor list from a mesh
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2007/11/21
%
% input:
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2 changes: 1 addition & 1 deletion meshedge.m
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%
% return all edges in a surface or volumetric mesh
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2011/02/26
%
% input:
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2 changes: 1 addition & 1 deletion meshgrid5.m
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% mesh an ND rectangular lattice by splitting
% each hypercube into 5 tetrahedra
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% inspired by John D'Errico
% URL: http://www.mathworks.com/matlabcentral/newsreader/view_thread/107191
%
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2 changes: 1 addition & 1 deletion meshquality.m
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%
% compute the Joe-Liu mesh quality measure of an N-D mesh (N<=3)
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2011/02/26
%
% input:
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2 changes: 1 addition & 1 deletion meshrefine.m
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%
% refine a tetrahedral mesh by adding new nodes or constraints
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input parameters:
% node: existing tetrahedral mesh node list
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2 changes: 1 addition & 1 deletion meshreorient.m
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% reorder nodes in a surface or tetrahedral mesh to ensure all
% elements are oriented consistently
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2010/05/05
%
% input:
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2 changes: 1 addition & 1 deletion meshresample.m
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%
% resample mesh using CGAL mesh simplification utility
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2007/11/12
%
% input:
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2 changes: 1 addition & 1 deletion neighborelem.m
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%
% create node neighbor list from a mesh
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2007/11/21
%
% input:
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2 changes: 1 addition & 1 deletion nodevolume.m
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%
% calculate the Voronoi volume of each node in a simplex mesh
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2009/12/31
%
% input:
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2 changes: 1 addition & 1 deletion readgts.m
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%
% read GNU Triangulated Surface files (GTS)
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2008/03/28
%
% input:
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2 changes: 1 addition & 1 deletion readinr.m
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%
% load a volume from an INR file
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2009/05/03
%
% input:
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2 changes: 1 addition & 1 deletion readmedit.m
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%
% read Medit mesh format
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% fname: name of the medit data file
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2 changes: 1 addition & 1 deletion readoff.m
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%
% read Geomview Object File Format (OFF)
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2008/03/28
%
% input:
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2 changes: 1 addition & 1 deletion readsmf.m
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%
% read simple model format (SMF)
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2007/11/21
%
% input:
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2 changes: 1 addition & 1 deletion readtetgen.m
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%
% read tetgen output files
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2007/11/21
%
% input:
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2 changes: 1 addition & 1 deletion removedupelem.m
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%
% remove doubly duplicated (folded) elements
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% elem: list of elements (node indices)
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2 changes: 1 addition & 1 deletion removeisolatednode.m
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%
% remove isolated nodes: nodes that are not included in any element
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% node: list of node coordinates
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