Fix pass-QC in output FASTQ read names

See #922
fulcrumgenomics · Jul 24, 2023 · 0b68d7e · 0b68d7e
1 parent e197ce4
commit 0b68d7e
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/main/scala/com/fulcrumgenomics/fastq/DemuxFastqs.scala b/src/main/scala/com/fulcrumgenomics/fastq/DemuxFastqs.scala
@@ -913,7 +913,7 @@ object OutputType extends FgBioEnum[OutputType] {
   */
 case class ReadInfo(readNumber: Int, passQc: Boolean, internalControl: Boolean, sampleInfo: String, rest: Seq[String]) {
   override def toString: String = {
-    val leading = f"$readNumber:${if (passQc) "Y" else "N"}:${if (internalControl) 1 else 0}:$sampleInfo"
+    val leading = f"$readNumber:${if (passQc) "N" else "Y"}:${if (internalControl) 1 else 0}:$sampleInfo"
     if (rest.isEmpty) leading else leading + " " + rest.mkString(" ")
   }
 }